Solyc10g078700.1 (Solanum lycopersicum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Solyc10g078700.1 T323072_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.927 0.813
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.927 0.813
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.887 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc10g078700.1.1 SBP 76 150

Links

Other SBP family TFs
Other Solanum lycopersicum TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.987
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.983
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.967
PK18312.1 Cannabis sativa PK18312.1 I 0.955
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.953
29269.m000250 Ricinus communis 29269.m000250 I 0.953
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.953
TCM_024873 Theobroma cacao TCM_024873 I 0.953
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.951
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.950
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.949
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.948
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.947
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.947
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.944
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.943
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.943
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.941
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.941
Thhalv10006058m.g Eutrema salsugineum Thhalv10006058m.g I 0.941
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.940
Ca_07299 Cicer arietinum Ca_07299 I 0.940
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.939
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.939
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.938
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.937
F775_10743 Aegilops tauschii F775_10743 I 0.931
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.930
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.930
Pm002693 Prunus mume Pm002693 I 0.930
MDP0000297978 Malus domestica MDP0000297978 I 0.930
Carubv10017540m.g Capsella rubella Carubv10017540m.g I 0.928
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I 0.928
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I 0.928
Bostr.20903s0042 Boechera stricta Bostr.20903s0042 I 0.928
SPL15 Arabidopsis thaliana AT3G57920 D 0.927
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I 0.927
Bo4g109710 Brassica oleracea Bo4g109710 I 0.926
Bo6g073290 Brassica oleracea Bo6g073290 I 0.926
OB08G26920 Oryza brachyantha OB08G26920 I 0.926
mgf001295m Mimulus guttatus mgf001295m I 0.924
SPL14 Oryza sativa OS08G0509600 I 0.924
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.924
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.924
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.924
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.924
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.924
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.923
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.923
Si030195m.g Setaria italica Si030195m.g I 0.923
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.922
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.922
OBART09G14800 Oryza barthii OBART09G14800 I 0.922
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.922
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.922
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.922
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.922
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.922
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.922
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.922
Si013870m.g Setaria italica Si013870m.g I 0.920
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.918
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.918
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.917
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.916
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.914
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.913
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.913
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.911
OS09G0491532 Oryza sativa OS09G0491532 I 0.911
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.911
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.909
mgf012995m Mimulus guttatus mgf012995m I 0.908
Bra003305 Brassica rapa Bra003305 I 0.907
Bra014599 Brassica rapa Bra014599 I 0.904
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.899
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.898
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.895
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.895
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.893
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.890
Pm007035 Prunus mume Pm007035 I 0.890
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.890
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.887
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.887
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.886