TCM_008150 (Theobroma cacao)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 TCM_008150 T323078_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.953 0.853
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.936 0.747
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.933 0.747
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.932 0.773
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.932 0.773
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.932 0.773
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.928 0.773
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.926 0.773
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.926 0.773
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.926 0.773
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.923 0.733
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.923 0.760
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.920 0.760
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.920 0.760
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.920 0.760
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.916 0.747
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.914 0.747
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.914 0.747
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.914 0.747
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.901 0.760
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX99466 SBP 113 187

Links

Other SBP family TFs
Other Theobroma cacao TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HMGB13 Arabidopsis thaliana AT4G11080 D 0.000
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.000
mgf015439m Mimulus guttatus mgf015439m I 0.000
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.000
30190.m010807 Ricinus communis 30190.m010807 I 0.000
Pm024077 Prunus mume Pm024077 I 0.000
Cla011101 Citrullus lanatus Cla011101 I 0.000
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.000
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.000
TCM_016416 Theobroma cacao TCM_016416 I 0.000
Si017040m.g Setaria italica Si017040m.g I 0.000
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.000
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.000
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.000
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.000
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.000
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.000
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.000
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.000
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.000
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.000
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.000
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.000
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.000
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.000
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.000
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.000
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.000
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.000
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.000
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.000
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.000
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.000
Bra035256 Brassica rapa Bra035256 I 0.000
Bra013731 Brassica rapa Bra013731 I 0.000
Bo1g037180 Brassica oleracea Bo1g037180 I 0.000
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.000
HMGB6 Arabidopsis thaliana AT4G23800 I 0.000
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.000
PK10992.1 Cannabis sativa PK10992.1 I 0.000
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.000
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.000
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.000
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.000
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.000
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.000
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.000
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.000
OBART02G11160 Oryza barthii OBART02G11160 I 0.000
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.000
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.000
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.000
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.000
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.000
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.000
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.000
OB02G19930 Oryza brachyantha OB02G19930 N 0.000
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.000
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.000
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.000
F775_10696 Aegilops tauschii F775_10696 N 0.000