CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ca_08506
(
Cicer arietinum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Ca_08506
T323169_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.968
0.840
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.913
0.827
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.913
0.827
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ca_08506
SBP
171
245
CQVEGCSLDLSSAKGYHRKHRVCETHSKSPLVVIAGLERRFCQQCSRFHALFEFDENKRSCRKRLSHHNARRRKP
Links
Other
SBP
family TFs
Other
Cicer arietinum
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SPL10
Arabidopsis thaliana
AT1G27370
D
0.968
Bra032823
Brassica rapa
Bra032823
I
0.964
Bo5g051970
Brassica oleracea
Bo5g051970
I
0.962
Thhalv10007882m.g
Eutrema salsugineum
Thhalv10007882m.g
I
0.951
Bo3g141480
Brassica oleracea
Bo3g141480
I
0.948
Bra030041
Brassica rapa
Bra030041
I
0.945
Bo7g049940
Brassica oleracea
Bo7g049940
I
0.943
Ca_11356
Cicer arietinum
Ca_11356
I
0.942
Bo5g051980
Brassica oleracea
Bo5g051980
I
0.942
SPL10
Arabidopsis lyrata
fgenesh2_kg.1__2893__AT1G27370.2
I
0.941
Thhalv10007832m.g
Eutrema salsugineum
Thhalv10007832m.g
I
0.941
Bostr.15697s0063
Boechera stricta
Bostr.15697s0063
I
0.940
Bra030040
Brassica rapa
Bra030040
I
0.940
Carubv10009364m.g
Capsella rubella
Carubv10009364m.g
I
0.934
Cagra.8874s0008
Capsella grandiflora
Cagra.8874s0008
I
0.934
Bostr.15697s0062
Boechera stricta
Bostr.15697s0062
I
0.934
Bo7g049950
Brassica oleracea
Bo7g049950
I
0.934
Bra010949
Brassica rapa
Bra010949
I
0.930
Lus10006411.g
Linum usitatissimum
Lus10006411.g
I
0.927
Eucgr.B03500
Eucalyptus grandis
Eucgr.B03500
I
0.926
LjSGA_032871.1
Lotus japonicus
LjSGA_032871.1
N
0.921
TCM_008772
Theobroma cacao
TCM_008772
N
0.918
SapurV1A.0001s2320
Salix purpurea
SapurV1A.0001s2320
N
0.917
Carubv10009367m.g
Capsella rubella
Carubv10009367m.g
I
0.915
Cagra.8874s0007
Capsella grandiflora
Cagra.8874s0007
I
0.915
PGSC0003DMG400026736
Solanum tuberosum
PGSC0003DMG400026736
I
0.914
SPL11
Arabidopsis thaliana
AT1G27360
D
0.913
PK16953.1
Cannabis sativa
PK16953.1
N
0.910
cassava12059.valid.m1
Manihot esculenta
cassava12059.valid.m1
N
0.908
Pm007020
Prunus mume
Pm007020
N
0.907
MDP0000155354
Malus domestica
MDP0000155354
N
0.907
Lus10011356.g
Linum usitatissimum
Lus10011356.g
I
0.906
orange1.1g011640m.g
Citrus sinensis
orange1.1g011640m.g
N
0.905
Ciclev10031391m.g
Citrus clementina
Ciclev10031391m.g
N
0.905
Gorai.002G182700
Gossypium raimondii
Gorai.002G182700
N
0.904
cassava6540.valid.m1
Manihot esculenta
cassava6540.valid.m1
N
0.903
PRUPE_ppa005013mg
Prunus persica
PRUPE_ppa005013mg
N
0.902
SPL11
Arabidopsis lyrata
scaffold_103051.1
I
0.901
Sb10g029190
Sorghum bicolor
Sb10g029190
N
0.896
Si006472m.g
Setaria italica
Si006472m.g
N
0.894
Bra032822
Brassica rapa
Bra032822
I
0.893
GRMZM2G414805
Zea mays
GRMZM2G414805
N
0.891
VIT_01s0010g03710
Vitis vinifera
VIT_01s0010g03710
I
0.891
POPTR_0003s17120
Populus trichocarpa
POPTR_0003s17120
I
0.886
POPTR_0001s13890
Populus trichocarpa
POPTR_0001s13890
I
0.886
SapurV1A.0056s0240
Salix purpurea
SapurV1A.0056s0240
I
0.886
SapurV1A.1271s0060
Salix purpurea
SapurV1A.1271s0060
I
0.886