Ca_08506 (Cicer arietinum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Ca_08506 T323169_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.968 0.840
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.913 0.827
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.913 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_08506 SBP 171 245

Links

Other SBP family TFs
Other Cicer arietinum TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL11 Arabidopsis thaliana AT1G27360 D 0.913
SPL10 Arabidopsis thaliana AT1G27370 D 0.968
Bo3g141480 Brassica oleracea Bo3g141480 I 0.948
Bo5g051970 Brassica oleracea Bo5g051970 I 0.962
Bo5g051980 Brassica oleracea Bo5g051980 I 0.942
Bo7g049940 Brassica oleracea Bo7g049940 I 0.943
Bo7g049950 Brassica oleracea Bo7g049950 I 0.934
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.934
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.940
Bra010949 Brassica rapa Bra010949 I 0.930
Bra030040 Brassica rapa Bra030040 I 0.940
Bra030041 Brassica rapa Bra030041 I 0.945
Bra032822 Brassica rapa Bra032822 I 0.893
Bra032823 Brassica rapa Bra032823 I 0.964
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.915
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.934
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.934
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.915
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.908
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.903
Ca_11356 Cicer arietinum Ca_11356 I 0.942
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.905
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.926
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.941
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.904
GRMZM2G414805 Zea mays GRMZM2G414805 N 0.891
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.921
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.927
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.906
MDP0000155354 Malus domestica MDP0000155354 N 0.907
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.905
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.914
PK16953.1 Cannabis sativa PK16953.1 N 0.910
Pm007020 Prunus mume Pm007020 N 0.907
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.886
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.886
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.902
SapurV1A.0001s2320 Salix purpurea SapurV1A.0001s2320 N 0.917
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.886
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.886
Sb10g029190 Sorghum bicolor Sb10g029190 N 0.896
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.901
Si006472m.g Setaria italica Si006472m.g N 0.894
TCM_008772 Theobroma cacao TCM_008772 N 0.918
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.941
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.951
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.891