CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla009788
(
Citrullus lanatus
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Cla009788
T323187_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA
TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.921
0.733
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.921
0.733
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.921
0.733
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN
NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.909
0.747
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.897
0.733
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla009788
SBP
55
129
CQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKI
Links
Other
SBP
family TFs
Other
Citrullus lanatus
TFs
225 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy