Cla022022 (Citrullus lanatus)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cla022022 T323196_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.973 0.840
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.973 0.840
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022022 SBP 137 211

Links

Other SBP family TFs
Other Citrullus lanatus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.984
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.979
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.979
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.979
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.979
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.979
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.979
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.979
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.979
Bo9g154530 Brassica oleracea Bo9g154530 I 0.979
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.979
Bra002188 Brassica rapa Bra002188 I 0.979
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.979
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.978
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.978
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.978
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.976
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.976
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.976
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.976
TCM_021101 Theobroma cacao TCM_021101 I 0.976
Si021754m.g Setaria italica Si021754m.g I 0.976
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.976
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.975
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.974
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.974
OBART05G16150 Oryza barthii OBART05G16150 I 0.974
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.974
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.974
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.974
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.974
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.974
OB05G24080 Oryza brachyantha OB05G24080 I 0.974
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.974
SPL9 Oryza sativa OS05G0408200 I 0.974
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.974
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.974
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.973
29726.m003959 Ricinus communis 29726.m003959 I 0.973
SPL7 Arabidopsis thaliana AT5G18830 D 0.973
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.973
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.972
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.972
PK29723.1 Cannabis sativa PK29723.1 I 0.972
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.971
mgf004695m Mimulus guttatus mgf004695m I 0.968
F775_04392 Aegilops tauschii F775_04392 I 0.967
MDP0000271587 Malus domestica MDP0000271587 I 0.967
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.965
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.965
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.964
Ca_00550 Cicer arietinum Ca_00550 I 0.963
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.962
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.961
Pm008092 Prunus mume Pm008092 I 0.958
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.958
Bo00629s160 Brassica oleracea Bo00629s160 I 0.958
Bra023695 Brassica rapa Bra023695 I 0.958
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.955
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.954
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.951
MDP0000195461 Malus domestica MDP0000195461 I 0.951
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.950
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.899
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.896