29929.m004641 (Ricinus communis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 29929.m004641 T323220_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.908 0.853
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29929.m004641 SBP 188 262

Links

Other SBP family TFs
Other Ricinus communis TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
mgf019346m Mimulus guttatus mgf019346m I 0.985
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.982
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.982
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.982
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.982
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.982
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.981
PK16953.1 Cannabis sativa PK16953.1 N 0.980
Bo7g065290 Brassica oleracea Bo7g065290 N 0.979
Bra033671 Brassica rapa Bra033671 N 0.978
SPL2 Arabidopsis thaliana AT5G43270 N 0.978
mgf010397m Mimulus guttatus mgf010397m N 0.978
Bra027478 Brassica rapa Bra027478 N 0.978
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.978
Bo9g058970 Brassica oleracea Bo9g058970 N 0.978
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.978
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.978
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.977
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.977
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.977
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.977
MDP0000155354 Malus domestica MDP0000155354 N 0.977
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.977
Pm007020 Prunus mume Pm007020 N 0.977
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.974
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.974
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.974
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.972
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.970
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.970
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.969
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.967
TCM_008772 Theobroma cacao TCM_008772 N 0.967
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.965
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.963
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.962
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.962
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.960
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.960
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.960
Si017749m.g Setaria italica Si017749m.g N 0.959
Ca_11356 Cicer arietinum Ca_11356 I 0.956
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.951
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.950
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.950
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.949
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.943
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.943
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.943
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.941
Bo5g051980 Brassica oleracea Bo5g051980 I 0.941
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.940
Bra030040 Brassica rapa Bra030040 I 0.939
Bo7g049950 Brassica oleracea Bo7g049950 I 0.936
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.935
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.930
Bra010949 Brassica rapa Bra010949 I 0.929
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.929
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.929
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.929
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.926
OB02G12930 Oryza brachyantha OB02G12930 N 0.926
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.926
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.924
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.924
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.923
OS02G0139400 Oryza sativa OS02G0139400 N 0.921
OBART02G03260 Oryza barthii OBART02G03260 N 0.921
SPL3 Oryza indica BGIOSGA007499 N 0.921
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.921
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.921
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.921
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.921
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.921
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.921
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.921
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.920
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.920
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.920
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.918
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.918
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.917
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.916
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.916
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.916
F775_31908 Aegilops tauschii F775_31908 N 0.914
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.914
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.913
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.913
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.911
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.911
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.911
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.911
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.911
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.910
MDP0000249364 Malus domestica MDP0000249364 N 0.909
OB02G14840 Oryza brachyantha OB02G14840 N 0.909
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.908
OBART06G26610 Oryza barthii OBART06G26610 N 0.908
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.908
SPL12 Oryza indica BGIOSGA020577 N 0.908
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.908
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.908
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.908
SPL10 Arabidopsis thaliana AT1G27370 D 0.908
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.908
SPL12 Oryza sativa OS06G0703500 N 0.908
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.907
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.907
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.907
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.907
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.907
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.907
SPL4 Oryza sativa OS02G0174100 N 0.907
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.907
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.907
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.906
Bra030041 Brassica rapa Bra030041 I 0.903
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N 0.902
OBART06G23820 Oryza barthii OBART06G23820 N 0.902
OB06G31550 Oryza brachyantha OB06G31550 N 0.902
SPL11 Oryza sativa OS06G0663500 N 0.902
OMERI06G23750 Oryza meridionalis OMERI06G23750 N 0.902
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N 0.902
BGIOSGA020731 Oryza indica BGIOSGA020731 N 0.902
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N 0.902
ONIVA06G27990 Oryza nivara ONIVA06G27990 N 0.902
Bo7g049940 Brassica oleracea Bo7g049940 I 0.900
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.899
Bra032823 Brassica rapa Bra032823 I 0.898
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.898
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.895
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.895
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.895
Bo5g051970 Brassica oleracea Bo5g051970 I 0.893
OB06G34330 Oryza brachyantha OB06G34330 N 0.888