CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava13944.valid.m1
(
Manihot esculenta
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
cassava13944.valid.m1
T323232_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.976
0.947
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN
NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.900
0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN
NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.897
0.800
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava13944.valid.m1
SBP
155
229
CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVIAAGLAQRFCQQCSRFHLLSEFDNGKRSCRRRLADHNRRRRKS
Links
Other
SBP
family TFs
Other
Manihot esculenta
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa008560mg
Prunus persica
PRUPE_ppa008560mg
I
0.983
Pm017777
Prunus mume
Pm017777
I
0.983
Eucgr.E01600
Eucalyptus grandis
Eucgr.E01600
I
0.978
cassava19899.m1
Manihot esculenta
cassava19899.m1
I
0.978
POPTR_0014s05680
Populus trichocarpa
POPTR_0014s05680
I
0.978
POPTR_0002s14320
Populus trichocarpa
POPTR_0002s14320
I
0.978
Gorai.001G176000
Gossypium raimondii
Gorai.001G176000
I
0.978
Gorai.008G107400
Gossypium raimondii
Gorai.008G107400
I
0.978
30174.m008803
Ricinus communis
30174.m008803
I
0.978
evm.TU.supercontig_149.10
Carica papaya
evm.TU.supercontig_149.10
I
0.978
TCM_005622
Theobroma cacao
TCM_005622
I
0.978
SapurV1A.0382s0100
Salix purpurea
SapurV1A.0382s0100
I
0.978
PGSC0003DMG400029162
Solanum tuberosum
PGSC0003DMG400029162
I
0.977
Solyc10g018780.1
Solanum lycopersicum
Solyc10g018780.1
I
0.977
Solyc01g090730.2
Solanum lycopersicum
Solyc01g090730.2
I
0.977
GLYMA03G27180
Glycine max
GLYMA03G27180
I
0.977
PGSC0003DMG400026027
Solanum tuberosum
PGSC0003DMG400026027
I
0.977
mgf016085m
Mimulus guttatus
mgf016085m
I
0.977
Ca_18942
Cicer arietinum
Ca_18942
I
0.977
GLYMA07G14610
Glycine max
GLYMA07G14610
I
0.977
PK25779.1
Cannabis sativa
PK25779.1
I
0.977
SPL8
Arabidopsis thaliana
AT1G02065
D
0.976
MTR_8g005960
Medicago truncatula
MTR_8g005960
I
0.976
Bo8g118210
Brassica oleracea
Bo8g118210
I
0.976
Bo5g001290
Brassica oleracea
Bo5g001290
I
0.976
orange1.1g020302m.g
Citrus sinensis
orange1.1g020302m.g
I
0.976
Thhalv10008083m.g
Eutrema salsugineum
Thhalv10008083m.g
I
0.976
Bra033221
Brassica rapa
Bra033221
I
0.976
Bostr.5325s0127
Boechera stricta
Bostr.5325s0127
I
0.976
Cagra.1968s0141
Capsella grandiflora
Cagra.1968s0141
I
0.976
Cla006776
Citrullus lanatus
Cla006776
I
0.976
Bra032662
Brassica rapa
Bra032662
I
0.976
gene04786-v1.0-hybrid
Fragaria vesca
gene04786-v1.0-hybrid
I
0.976
Ciclev10021106m.g
Citrus clementina
Ciclev10021106m.g
I
0.976
SPL8
Arabidopsis lyrata
fgenesh2_kg.1__23__AT1G02065.1
I
0.976
Carubv10009506m.g
Capsella rubella
Carubv10009506m.g
I
0.975
MDP0000803116
Malus domestica
MDP0000803116
I
0.974
SapurV1A.0033s0300
Salix purpurea
SapurV1A.0033s0300
I
0.973
Lus10028181.g
Linum usitatissimum
Lus10028181.g
I
0.973
SPL8
Vitis vinifera
VIT_15s0021g02300
I
0.973
Lus10042882.g
Linum usitatissimum
Lus10042882.g
I
0.972
GLYMA01G15258
Glycine max
GLYMA01G15258
I
0.966
Cucsa.120620
Cucumis sativus
Cucsa.120620
I
0.963
AMTR_s00019p00235390
Amborella trichopoda
AMTR_s00019p00235390
I
0.958
GSMUA_Achr7G08750_001
Musa acuminata
GSMUA_Achr7G08750_001
I
0.943
GSMUA_Achr4G28960_001
Musa acuminata
GSMUA_Achr4G28960_001
I
0.940
Aquca_024_00116
Aquilegia coerulea
Aquca_024_00116
I
0.935
GSMUA_Achr2G11940_001
Musa acuminata
GSMUA_Achr2G11940_001
I
0.934
fgenesh1_pg.scaffold_337000032
Physcomitrella patens
fgenesh1_pg.scaffold_337000032
I
0.930
fgenesh1_pg.scaffold_23000047
Physcomitrella patens
fgenesh1_pg.scaffold_23000047
I
0.926
GSMUA_Achr10G06210_001
Musa acuminata
GSMUA_Achr10G06210_001
I
0.925
GSMUA_Achr4G20590_001
Musa acuminata
GSMUA_Achr4G20590_001
I
0.923
GSMUA_Achr4G24610_001
Musa acuminata
GSMUA_Achr4G24610_001
I
0.922
gene29726-v1.0-hybrid
Fragaria vesca
gene29726-v1.0-hybrid
I
0.920
MDP0000158607
Malus domestica
MDP0000158607
I
0.920
GLYMA06G36140
Glycine max
GLYMA06G36140
I
0.917
chr3.CM0282.980.nc
Lotus japonicus
chr3.CM0282.980.nc
I
0.917
Ca_16243
Cicer arietinum
Ca_16243
I
0.916
MTR_8g463140
Medicago truncatula
MTR_8g463140
I
0.916
GLYMA12G27330
Glycine max
GLYMA12G27330
I
0.916
SELMODRAFT_59543
Selaginella moellendorffii
SELMODRAFT_59543
I
0.915
SELMODRAFT_49502
Selaginella moellendorffii
SELMODRAFT_49502
I
0.915
GSMUA_Achr3G00810_001
Musa acuminata
GSMUA_Achr3G00810_001
I
0.914
Pm011381
Prunus mume
Pm011381
I
0.910
PRUPE_ppa022739mg
Prunus persica
PRUPE_ppa022739mg
I
0.910
Cucsa.196000
Cucumis sativus
Cucsa.196000
I
0.908
Cla009788
Citrullus lanatus
Cla009788
I
0.907
chr3.CM0160.520.nc
Lotus japonicus
chr3.CM0160.520.nc
I
0.907
Solyc10g009080.2
Solanum lycopersicum
Solyc10g009080.2
I
0.907
SapurV1A.0012s0510
Salix purpurea
SapurV1A.0012s0510
I
0.906
MDP0000156994
Malus domestica
MDP0000156994
I
0.905
MDP0000861601
Malus domestica
MDP0000861601
I
0.905
SPL5
Oryza sativa
OS02G0177300
I
0.901
OMERI02G06720
Oryza meridionalis
OMERI02G06720
I
0.901
Cla023735
Citrullus lanatus
Cla023735
I
0.901
ORGLA02G0053800
Oryza glaberrima
ORGLA02G0053800
I
0.901
BGIOSGA007655
Oryza indica
BGIOSGA007655
I
0.901
orange1.1g032310m.g
Citrus sinensis
orange1.1g032310m.g
I
0.900
fgenesh1_pg.scaffold_252000020
Physcomitrella patens
fgenesh1_pg.scaffold_252000020
D
0.900
Ciclev10017104m.g
Citrus clementina
Ciclev10017104m.g
I
0.900
PK26639.1
Cannabis sativa
PK26639.1
I
0.898
fgenesh1_pg.scaffold_194000034
Physcomitrella patens
fgenesh1_pg.scaffold_194000034
D
0.897
Eucgr.E03260
Eucalyptus grandis
Eucgr.E03260
I
0.896
SELMODRAFT_28630
Selaginella moellendorffii
SELMODRAFT_28630
I
0.896
SapurV1A.0382s0120
Salix purpurea
SapurV1A.0382s0120
I
0.896
SELMODRAFT_17706
Selaginella moellendorffii
SELMODRAFT_17706
I
0.896
fgenesh1_pg.scaffold_50000085
Physcomitrella patens
fgenesh1_pg.scaffold_50000085
I
0.896
POPTR_0004s04630
Populus trichocarpa
POPTR_0004s04630
I
0.896
MLOC_57503
Hordeum vulgare
MLOC_57503
I
0.893
OB04G34990
Oryza brachyantha
OB04G34990
I
0.893
OBART04G27990
Oryza barthii
OBART04G27990
I
0.893
LPERR04G23580
Leersia perrieri
LPERR04G23580
I
0.893
Pavir.Gb00284
Panicum virgatum
Pavir.Gb00284
I
0.893
BGIOSGA017275
Oryza indica
BGIOSGA017275
I
0.893
BRADI5G24670
Brachypodium distachyon
BRADI5G24670
I
0.893
GRMZM2G036297
Zea mays
GRMZM2G036297
I
0.893
OGLUM04G27880
Oryza glumaepatula
OGLUM04G27880
I
0.893
Pavir.Ga00066
Panicum virgatum
Pavir.Ga00066
I
0.893
ONIVA04G26660
Oryza nivara
ONIVA04G26660
I
0.893
Sb06g031290
Sorghum bicolor
Sb06g031290
I
0.893
Si022315m.g
Setaria italica
Si022315m.g
I
0.893
TRIUR3_10193
Triticum urartu
TRIUR3_10193
I
0.893
TRIUR3_34351
Triticum urartu
TRIUR3_34351
I
0.893
SPL8
Oryza sativa
OS04G0656500
I
0.893
ORUFI04G29620
Oryza rufipogon
ORUFI04G29620
I
0.893
OMERI04G23390
Oryza meridionalis
OMERI04G23390
I
0.893
OPUNC04G25460
Oryza punctata
OPUNC04G25460
I
0.893
ORGLA04G0242500
Oryza glaberrima
ORGLA04G0242500
I
0.893
OLONG_021174
Oryza longistaminata
OLONG_021174
I
0.893
Si017338m.g
Setaria italica
Si017338m.g
I
0.892
GRMZM2G168229
Zea mays
GRMZM2G168229
I
0.892
GRMZM2G058588
Zea mays
GRMZM2G058588
I
0.890
PGSC0003DMG400022824
Solanum tuberosum
PGSC0003DMG400022824
I
0.888
GLYMA13G31090
Glycine max
GLYMA13G31090
I
0.888
PGSC0003DMG400032817
Solanum tuberosum
PGSC0003DMG400032817
I
0.887