cassava13944.valid.m1 (Manihot esculenta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 cassava13944.valid.m1 T323232_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW

WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.976 0.947
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN

NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.900 0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN

NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.897 0.800
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava13944.valid.m1 SBP 155 229

Links

Other SBP family TFs
Other Manihot esculenta TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.983
Pm017777 Prunus mume Pm017777 I 0.983
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.978
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.978
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.978
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.978
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.978
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.978
30174.m008803 Ricinus communis 30174.m008803 I 0.978
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.978
TCM_005622 Theobroma cacao TCM_005622 I 0.978
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.978
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.977
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.977
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.977
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.977
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.977
mgf016085m Mimulus guttatus mgf016085m I 0.977
Ca_18942 Cicer arietinum Ca_18942 I 0.977
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.977
PK25779.1 Cannabis sativa PK25779.1 I 0.977
SPL8 Arabidopsis thaliana AT1G02065 D 0.976
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.976
Bo8g118210 Brassica oleracea Bo8g118210 I 0.976
Bo5g001290 Brassica oleracea Bo5g001290 I 0.976
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.976
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.976
Bra033221 Brassica rapa Bra033221 I 0.976
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.976
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.976
Cla006776 Citrullus lanatus Cla006776 I 0.976
Bra032662 Brassica rapa Bra032662 I 0.976
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.976
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.976
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.976
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.975
MDP0000803116 Malus domestica MDP0000803116 I 0.974
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.973
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.973
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.973
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.972
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.966
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.963
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.958
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.943
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.940
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.935
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.934
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.930
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.926
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.925
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.923
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.922
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.920
MDP0000158607 Malus domestica MDP0000158607 I 0.920
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.917
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.917
Ca_16243 Cicer arietinum Ca_16243 I 0.916
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.916
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.916
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.915
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.915
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.914
Pm011381 Prunus mume Pm011381 I 0.910
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.910
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.908
Cla009788 Citrullus lanatus Cla009788 I 0.907
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.907
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.907
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.906
MDP0000156994 Malus domestica MDP0000156994 I 0.905
MDP0000861601 Malus domestica MDP0000861601 I 0.905
SPL5 Oryza sativa OS02G0177300 I 0.901
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.901
Cla023735 Citrullus lanatus Cla023735 I 0.901
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.901
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.901
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.900
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.900
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.900
PK26639.1 Cannabis sativa PK26639.1 I 0.898
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.897
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.896
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.896
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.896
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.896
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.896
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.896
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.893
OB04G34990 Oryza brachyantha OB04G34990 I 0.893
OBART04G27990 Oryza barthii OBART04G27990 I 0.893
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.893
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.893
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.893
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.893
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.893
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.893
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.893
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.893
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.893
Si022315m.g Setaria italica Si022315m.g I 0.893
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.893
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.893
SPL8 Oryza sativa OS04G0656500 I 0.893
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.893
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.893
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.893
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.893
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.893
Si017338m.g Setaria italica Si017338m.g I 0.892
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.892
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.890
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.888
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.888
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.887