cassava1985.valid.m1 (Manihot esculenta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 cassava1985.valid.m1 T323235_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.955 0.880
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.955 0.880
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava1985.valid.m1 SBP 112 186

Links

Other SBP family TFs
Other Manihot esculenta TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra023695 Brassica rapa Bra023695 I 0.967
Bo00629s160 Brassica oleracea Bo00629s160 I 0.964
MDP0000271587 Malus domestica MDP0000271587 I 0.962
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.961
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.960
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.959
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.959
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.959
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.959
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.959
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.959
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.957
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.957
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.957
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.957
SPL7 Arabidopsis thaliana AT5G18830 D 0.955
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.955
Cla022022 Citrullus lanatus Cla022022 I 0.955
Pm008092 Prunus mume Pm008092 I 0.953
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.953
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.953
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.953
Bra002188 Brassica rapa Bra002188 I 0.952
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.952
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.952
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.952
Bo9g154530 Brassica oleracea Bo9g154530 I 0.952
MDP0000195461 Malus domestica MDP0000195461 I 0.951
29726.m003959 Ricinus communis 29726.m003959 I 0.949
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.949
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.948
Si021754m.g Setaria italica Si021754m.g I 0.947
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.947
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.946
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.945
mgf004695m Mimulus guttatus mgf004695m I 0.945
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.944
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.943
OBART05G16150 Oryza barthii OBART05G16150 I 0.942
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.942
OB05G24080 Oryza brachyantha OB05G24080 I 0.942
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.942
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.942
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.942
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.942
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.942
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.942
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.942
SPL9 Oryza sativa OS05G0408200 I 0.942
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.942
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.942
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.941
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.940
TCM_021101 Theobroma cacao TCM_021101 I 0.935
F775_04392 Aegilops tauschii F775_04392 I 0.934
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.934
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.933
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.933
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.930
PK29723.1 Cannabis sativa PK29723.1 I 0.922
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.916
Ca_00550 Cicer arietinum Ca_00550 I 0.912
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.909
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.901
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.901