cassava7955.valid.m1 (Manihot esculenta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 cassava7955.valid.m1 T323253_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN

NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.978 0.920
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG

CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.978 0.920
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava7955.valid.m1 SBP 128 202

Links

Other SBP family TFs
Other Manihot esculenta TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL7 Arabidopsis thaliana AT5G18830 D 0.978
PK29723.1 Cannabis sativa PK29723.1 I 0.962
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.977
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.977
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.950
mgf004695m Mimulus guttatus mgf004695m I 0.971
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.979
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.983
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.957
29726.m003959 Ricinus communis 29726.m003959 I 0.974
Pm008092 Prunus mume Pm008092 I 0.953
Cla022022 Citrullus lanatus Cla022022 I 0.979
Ca_00550 Cicer arietinum Ca_00550 I 0.959
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.980
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.976
TCM_021101 Theobroma cacao TCM_021101 I 0.973
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.977
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.981
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.980
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.942
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.962
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.974
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.975
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.981
MDP0000271587 Malus domestica MDP0000271587 I 0.957
MDP0000195461 Malus domestica MDP0000195461 I 0.948
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.972
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.972
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.966
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.961
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.964
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.975
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.983
Si021754m.g Setaria italica Si021754m.g I 0.977
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.969
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.975
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.979
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.966
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.979
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.977
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.975
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.976
F775_04392 Aegilops tauschii F775_04392 I 0.971
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.959
Bra023695 Brassica rapa Bra023695 I 0.961
Bra002188 Brassica rapa Bra002188 I 0.976
Bo9g154530 Brassica oleracea Bo9g154530 I 0.976
Bo00629s160 Brassica oleracea Bo00629s160 I 0.961
OB05G24080 Oryza brachyantha OB05G24080 I 0.975
OBART05G16150 Oryza barthii OBART05G16150 I 0.975
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.903
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.906
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.980
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.975
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.953
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.962
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.970
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.983
SPL9 Oryza sativa OS05G0408200 I 0.975
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.975
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.974
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.975
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.975
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.975
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.978