CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava7956.valid.m1
(
Manihot esculenta
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
cassava7956.valid.m1
T323254_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN
NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.978
0.920
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.978
0.920
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava7956.valid.m1
SBP
128
202
CQVPGCEADISELKGYHKRHRVCLRCANASSVVLDGESKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRK
Links
Other
SBP
family TFs
Other
Manihot esculenta
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy