Cucsa.054050 (Cucumis sativus)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cucsa.054050 T323256_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.900 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.054050.1 SBP 60 134

Links

Other SBP family TFs
Other Cucumis sativus TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla004156 Citrullus lanatus Cla004156 I 0.985
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.961
PK14243.1 Cannabis sativa PK14243.1 N 0.957
Pm016138 Prunus mume Pm016138 I 0.950
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.950
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.949
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.947
Si026656m.g Setaria italica Si026656m.g I 0.947
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.946
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.944
30147.m014478 Ricinus communis 30147.m014478 I 0.938
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.938
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.934
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.932
PK19500.1 Cannabis sativa PK19500.1 I 0.931
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.930
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.927
MDP0000142582 Malus domestica MDP0000142582 N 0.926
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.926
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.924
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.923
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.921
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.921
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.920
TCM_014668 Theobroma cacao TCM_014668 I 0.920
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.920
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.920
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.920
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.920
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.918
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.918
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.917
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.917
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.917
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.917
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.917
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.917
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.917
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.917
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.917
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.915
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.914
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.914
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.914
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.914
SPL16 Oryza sativa OS08G0531600 I 0.913
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.913
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.913
Ca_24733 Cicer arietinum Ca_24733 I 0.913
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.912
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.910
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.910
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.910
29929.m004627 Ricinus communis 29929.m004627 I 0.909
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.909
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.909
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.909
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.908
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.908
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.907
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.906
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.905
MDP0000193702 Malus domestica MDP0000193702 I 0.905
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.905
TCM_008671 Theobroma cacao TCM_008671 I 0.905
MDP0000119458 Malus domestica MDP0000119458 I 0.905
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.905
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.905
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.905
SPL19 Oryza sativa OS11G0496600 I 0.905
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.905
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.905
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.905
OS01G0922600 Oryza sativa OS01G0922600 I 0.904
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.904
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.904
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.902
Aquca_040_00115 Aquilegia coerulea Aquca_040_00115 N 0.902
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.900
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.900
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.900
Bo3g024180 Brassica oleracea Bo3g024180 I 0.900
SPL13A Arabidopsis thaliana AT5G50670 D 0.900
SPL13A Arabidopsis thaliana AT5G50570 I 0.900
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.900
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.899
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.899
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.899
Pm024528 Prunus mume Pm024528 I 0.899
Cla002666 Citrullus lanatus Cla002666 I 0.899
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.898
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.897
Bra022766 Brassica rapa Bra022766 I 0.897
mgf010913m Mimulus guttatus mgf010913m I 0.897
PK02140.1 Cannabis sativa PK02140.1 I 0.897
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.897
mgf003797m Mimulus guttatus mgf003797m I 0.897
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.896
Ca_05711 Cicer arietinum Ca_05711 I 0.896
Bo9g097630 Brassica oleracea Bo9g097630 I 0.896
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.896
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.896
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.895
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.894
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.894
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.894
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.894
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.893
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.892
OBART01G42150 Oryza barthii OBART01G42150 I 0.892
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.892
SPL18 Oryza sativa OS09G0507100 I 0.892
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.892
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.892
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.892
OBART09G15750 Oryza barthii OBART09G15750 I 0.892
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.891
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.891
Ca_01426 Cicer arietinum Ca_01426 I 0.891
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.891
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.890
Cla019579 Citrullus lanatus Cla019579 I 0.888
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.888
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.888
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.888
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.888
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.887
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.887