CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.120620
(
Cucumis sativus
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Cucsa.120620
T323258_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.975
0.880
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN
NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.907
0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN
NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.905
0.800
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.120620.1
SBP
161
235
CQAEGCNADLSQAKHYHRRHKVCEFHSTASTVITAGLTQRFCQQCSRFHVVGEFDNGKRSCRKRLADHNRRRRKT
Cucsa.120620.2
SBP
161
210
CQAEGCNADLSQAKHYHRRHKVCEFHSTASTVITAGLTQRFCQQCSRGFY
Links
Other
SBP
family TFs
Other
Cucumis sativus
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla006776
Citrullus lanatus
Cla006776
I
0.981
POPTR_0014s05680
Populus trichocarpa
POPTR_0014s05680
I
0.979
PK25779.1
Cannabis sativa
PK25779.1
I
0.979
PGSC0003DMG400029162
Solanum tuberosum
PGSC0003DMG400029162
I
0.979
PGSC0003DMG400026027
Solanum tuberosum
PGSC0003DMG400026027
I
0.979
Eucgr.E01600
Eucalyptus grandis
Eucgr.E01600
I
0.979
SapurV1A.0382s0100
Salix purpurea
SapurV1A.0382s0100
I
0.979
evm.TU.supercontig_149.10
Carica papaya
evm.TU.supercontig_149.10
I
0.979
Solyc01g090730.2
Solanum lycopersicum
Solyc01g090730.2
I
0.979
30174.m008803
Ricinus communis
30174.m008803
I
0.979
cassava19899.m1
Manihot esculenta
cassava19899.m1
I
0.979
Ca_18942
Cicer arietinum
Ca_18942
I
0.979
TCM_005622
Theobroma cacao
TCM_005622
I
0.979
Solyc10g018780.1
Solanum lycopersicum
Solyc10g018780.1
I
0.979
Gorai.001G176000
Gossypium raimondii
Gorai.001G176000
I
0.979
POPTR_0002s14320
Populus trichocarpa
POPTR_0002s14320
I
0.979
GLYMA07G14610
Glycine max
GLYMA07G14610
I
0.979
Gorai.008G107400
Gossypium raimondii
Gorai.008G107400
I
0.979
GLYMA03G27180
Glycine max
GLYMA03G27180
I
0.979
MTR_8g005960
Medicago truncatula
MTR_8g005960
I
0.978
mgf016085m
Mimulus guttatus
mgf016085m
I
0.978
Ciclev10021106m.g
Citrus clementina
Ciclev10021106m.g
I
0.977
orange1.1g020302m.g
Citrus sinensis
orange1.1g020302m.g
I
0.977
gene04786-v1.0-hybrid
Fragaria vesca
gene04786-v1.0-hybrid
I
0.977
MDP0000803116
Malus domestica
MDP0000803116
I
0.976
Bra033221
Brassica rapa
Bra033221
I
0.975
SPL8
Vitis vinifera
VIT_15s0021g02300
I
0.975
Bra032662
Brassica rapa
Bra032662
I
0.975
Bo8g118210
Brassica oleracea
Bo8g118210
I
0.975
Bo5g001290
Brassica oleracea
Bo5g001290
I
0.975
SPL8
Arabidopsis thaliana
AT1G02065
D
0.975
SapurV1A.0033s0300
Salix purpurea
SapurV1A.0033s0300
I
0.975
Bostr.5325s0127
Boechera stricta
Bostr.5325s0127
I
0.975
SPL8
Arabidopsis lyrata
fgenesh2_kg.1__23__AT1G02065.1
I
0.975
Lus10028181.g
Linum usitatissimum
Lus10028181.g
I
0.975
Thhalv10008083m.g
Eutrema salsugineum
Thhalv10008083m.g
I
0.975
Cagra.1968s0141
Capsella grandiflora
Cagra.1968s0141
I
0.975
Lus10042882.g
Linum usitatissimum
Lus10042882.g
I
0.974
Carubv10009506m.g
Capsella rubella
Carubv10009506m.g
I
0.973
GLYMA01G15258
Glycine max
GLYMA01G15258
I
0.970
Pm017777
Prunus mume
Pm017777
I
0.966
PRUPE_ppa008560mg
Prunus persica
PRUPE_ppa008560mg
I
0.966
cassava13944.valid.m1
Manihot esculenta
cassava13944.valid.m1
I
0.963
GSMUA_Achr7G08750_001
Musa acuminata
GSMUA_Achr7G08750_001
I
0.939
GSMUA_Achr4G28960_001
Musa acuminata
GSMUA_Achr4G28960_001
I
0.938
fgenesh1_pg.scaffold_337000032
Physcomitrella patens
fgenesh1_pg.scaffold_337000032
I
0.938
fgenesh1_pg.scaffold_23000047
Physcomitrella patens
fgenesh1_pg.scaffold_23000047
I
0.935
GSMUA_Achr2G11940_001
Musa acuminata
GSMUA_Achr2G11940_001
I
0.931
Aquca_024_00116
Aquilegia coerulea
Aquca_024_00116
I
0.930
SELMODRAFT_59543
Selaginella moellendorffii
SELMODRAFT_59543
I
0.921
SELMODRAFT_49502
Selaginella moellendorffii
SELMODRAFT_49502
I
0.921
GSMUA_Achr4G20590_001
Musa acuminata
GSMUA_Achr4G20590_001
I
0.921
GSMUA_Achr10G06210_001
Musa acuminata
GSMUA_Achr10G06210_001
I
0.920
GSMUA_Achr4G24610_001
Musa acuminata
GSMUA_Achr4G24610_001
I
0.918
GSMUA_Achr3G00810_001
Musa acuminata
GSMUA_Achr3G00810_001
I
0.912
fgenesh1_pg.scaffold_252000020
Physcomitrella patens
fgenesh1_pg.scaffold_252000020
D
0.907
fgenesh1_pg.scaffold_194000034
Physcomitrella patens
fgenesh1_pg.scaffold_194000034
D
0.905
SELMODRAFT_28630
Selaginella moellendorffii
SELMODRAFT_28630
I
0.903
SELMODRAFT_17706
Selaginella moellendorffii
SELMODRAFT_17706
I
0.903
fgenesh1_pg.scaffold_50000085
Physcomitrella patens
fgenesh1_pg.scaffold_50000085
I
0.903
AMTR_s00019p00235390
Amborella trichopoda
AMTR_s00019p00235390
I
0.901
BGIOSGA007655
Oryza indica
BGIOSGA007655
I
0.895
SPL5
Oryza sativa
OS02G0177300
I
0.895
ORGLA02G0053800
Oryza glaberrima
ORGLA02G0053800
I
0.895
OMERI02G06720
Oryza meridionalis
OMERI02G06720
I
0.895
SELMODRAFT_7674
Selaginella moellendorffii
SELMODRAFT_7674
I
0.891
SELMODRAFT_28629
Selaginella moellendorffii
SELMODRAFT_28629
I
0.891
SELMODRAFT_59884
Selaginella moellendorffii
SELMODRAFT_59884
I
0.891
Cla009788
Citrullus lanatus
Cla009788
I
0.891
SELMODRAFT_17777
Selaginella moellendorffii
SELMODRAFT_17777
I
0.890