Cucsa.120620 (Cucumis sativus)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cucsa.120620 T323258_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.975 0.880
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.907 0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.905 0.800
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.120620.1 SBP 161 235
Cucsa.120620.2 SBP 161 210

Links

Other SBP family TFs
Other Cucumis sativus TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla006776 Citrullus lanatus Cla006776 I 0.981
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.979
PK25779.1 Cannabis sativa PK25779.1 I 0.979
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.979
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.979
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.979
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.979
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.979
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.979
30174.m008803 Ricinus communis 30174.m008803 I 0.979
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.979
Ca_18942 Cicer arietinum Ca_18942 I 0.979
TCM_005622 Theobroma cacao TCM_005622 I 0.979
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.979
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.979
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.979
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.979
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.979
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.979
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.978
mgf016085m Mimulus guttatus mgf016085m I 0.978
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.977
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.977
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.977
MDP0000803116 Malus domestica MDP0000803116 I 0.976
Bra033221 Brassica rapa Bra033221 I 0.975
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.975
Bra032662 Brassica rapa Bra032662 I 0.975
Bo8g118210 Brassica oleracea Bo8g118210 I 0.975
Bo5g001290 Brassica oleracea Bo5g001290 I 0.975
SPL8 Arabidopsis thaliana AT1G02065 D 0.975
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.975
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.975
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.975
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.975
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.975
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.975
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.974
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.973
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.970
Pm017777 Prunus mume Pm017777 I 0.966
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.966
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.963
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.939
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.938
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.938
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.935
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.931
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.930
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.921
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.921
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.921
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.920
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.918
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.912
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.907
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.905
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.903
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.903
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.903
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.901
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.895
SPL5 Oryza sativa OS02G0177300 I 0.895
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.895
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.895
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.891
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.891
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.891
Cla009788 Citrullus lanatus Cla009788 I 0.891
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.890