fgenesh1_pg.scaffold_23000047 (Physcomitrella patens)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 fgenesh1_pg.scaffold_23000047 T323293_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.955 0.920
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.953 0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.949 0.893
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_23000047 SBP 533 620

Links

Other SBP family TFs
Other Physcomitrella patens TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.959
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.958
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.957
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.957
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.957
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.957
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.957
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.957
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.957
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.957
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.957
TCM_005622 Theobroma cacao TCM_005622 I 0.957
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.957
Ca_18942 Cicer arietinum Ca_18942 I 0.957
Cla006776 Citrullus lanatus Cla006776 I 0.957
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.957
30174.m008803 Ricinus communis 30174.m008803 I 0.957
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.957
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.957
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.957
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.957
PK25779.1 Cannabis sativa PK25779.1 I 0.957
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.957
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.957
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.957
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.957
MDP0000803116 Malus domestica MDP0000803116 I 0.957
mgf016085m Mimulus guttatus mgf016085m I 0.956
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.956
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.955
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.953
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.953
SPL8 Arabidopsis thaliana AT1G02065 D 0.953
Bra033221 Brassica rapa Bra033221 I 0.953
Bo8g118210 Brassica oleracea Bo8g118210 I 0.953
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.953
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.953
Bra032662 Brassica rapa Bra032662 I 0.953
Bo5g001290 Brassica oleracea Bo5g001290 I 0.953
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.953
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.952
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.950
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.949
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.948
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.946
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.944
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.943
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.943
Pm017777 Prunus mume Pm017777 I 0.935
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.935
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.935
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.932
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.932
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.926
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.919
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.919
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.913
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.911
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.909
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.906
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.904
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.897
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.891
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.887
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.886
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.886
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.886
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.886
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.886
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.886
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.886
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.886
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.886
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.886
SPL8 Oryza sativa OS04G0656500 I 0.886
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.886
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.886
Si022315m.g Setaria italica Si022315m.g I 0.886
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.886
OBART04G27990 Oryza barthii OBART04G27990 I 0.886
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.886
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.886
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.886
OB04G34990 Oryza brachyantha OB04G34990 I 0.886