Bostr.25993s0559 (Boechera stricta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Bostr.25993s0559 T323389_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL9
M01308_2.00 		Arabidopsis thaliana
NGTACKDNN
NNHMGTACN		 PBM
Lambert et al.(2019)
pTH11560 		0.968 0.960
SPL9
M07257_2.00 		Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN		 Dap-seq
OMalley et al.(2016)
SPL9_col_a 		0.968 0.960
SPL9
M07258_2.00 		Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL9_colamp_a 		0.968 0.960
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.25993s0559.1.p SBP 73 147

Links

Other SBP family TFs
Other Boechera stricta TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra004674 Brassica rapa Bra004674 I 0.981
Bo4g015800 Brassica oleracea Bo4g015800 I 0.981
Bra016891 Brassica rapa Bra016891 I 0.978
Bo4g191350 Brassica oleracea Bo4g191350 I 0.978
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.975
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.975
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.975
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.975
SPL9 Arabidopsis thaliana AT2G42200 D 0.968
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.937
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.931
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.922
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.922
Si030195m.g Setaria italica Si030195m.g I 0.922
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.920
29269.m000250 Ricinus communis 29269.m000250 I 0.920
TCM_024873 Theobroma cacao TCM_024873 I 0.920
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.920
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.917
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.917
MDP0000297978 Malus domestica MDP0000297978 I 0.917
Pm002693 Prunus mume Pm002693 I 0.917
PK18312.1 Cannabis sativa PK18312.1 I 0.917
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.915
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.914
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.913
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.913
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.912
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.910
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.909
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.909
F775_10743 Aegilops tauschii F775_10743 I 0.907
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.905
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.903
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.902
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.902
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.896
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.896
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.896
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.896
OBART09G14800 Oryza barthii OBART09G14800 I 0.896
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.896
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.896
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.896
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.896
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.896
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.896
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.896
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.896
Bra004363 Brassica rapa Bra004363 N 0.895
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.895
Bo6g108620 Brassica oleracea Bo6g108620 N 0.894
SPL14 Oryza sativa OS08G0509600 I 0.890
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.890
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.890
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.890
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.890
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.890
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.890
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.888
Ca_07299 Cicer arietinum Ca_07299 I 0.886