CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cagra.0537s0003
(
Capsella grandiflora
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Cagra.0537s0003
T323399_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.899
0.773
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN
NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.892
0.667
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.892
0.667
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.892
0.667
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0537s0003.1.p
SBP
135
209
CQVYGCNMDLSSSKDYHKRHRVCETHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Capsella grandiflora
TFs
253 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy