Carubv10009364m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10009364m.g T323412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.983 0.933
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.983 0.933
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.977 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009364m SBP 176 250
Carubv10009923m SBP 67 141

Links

Other SBP family TFs
Other Capsella rubella TFs

Invalid Input OrderBy

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action