Carubv10023478m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10023478m.g T323421_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN

NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.976 0.973
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH

DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.976 0.973
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA

TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.976 0.973
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023478m SBP 73 147
Carubv10023859m SBP 11 45

Links

Other SBP family TFs
Other Capsella rubella TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.981
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.981
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.979
SPL9 Arabidopsis thaliana AT2G42200 D 0.976
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.975
Bo4g015800 Brassica oleracea Bo4g015800 I 0.973
Bra004674 Brassica rapa Bra004674 I 0.973
Bra016891 Brassica rapa Bra016891 I 0.968
Bo4g191350 Brassica oleracea Bo4g191350 I 0.968
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.924
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.924
Pm002693 Prunus mume Pm002693 I 0.909
MDP0000297978 Malus domestica MDP0000297978 I 0.909
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.909
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.909
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.909
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.905
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.905
Bra004363 Brassica rapa Bra004363 N 0.904
Ca_24655 Cicer arietinum Ca_24655 I 0.904
Bo6g108620 Brassica oleracea Bo6g108620 N 0.903
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.901
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.894
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.894
MDP0000589558 Malus domestica MDP0000589558 I 0.892
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.892
Pm030597 Prunus mume Pm030597 I 0.892
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.891
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.891
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.891
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.891
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.889
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.889
Si030195m.g Setaria italica Si030195m.g I 0.889
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.887
TCM_024873 Theobroma cacao TCM_024873 I 0.886
29269.m000250 Ricinus communis 29269.m000250 I 0.886
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.886
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.886