CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10023478m.g
(
Capsella rubella
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Carubv10023478m.g
T323421_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN
NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.976
0.973
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.976
0.973
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.976
0.973
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10023478m
SBP
73
147
CQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKP
Carubv10023859m
SBP
11
45
CINPTHRFHQLPEFDLEKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Capsella rubella
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SPL9
Arabidopsis lyrata
scaffold_403069.1
I
0.981
Cagra.2636s0004
Capsella grandiflora
Cagra.2636s0004
I
0.981
Thhalv10016816m.g
Eutrema salsugineum
Thhalv10016816m.g
I
0.979
SPL9
Arabidopsis thaliana
AT2G42200
D
0.976
Bostr.25993s0559
Boechera stricta
Bostr.25993s0559
I
0.975
Bo4g015800
Brassica oleracea
Bo4g015800
I
0.973
Bra004674
Brassica rapa
Bra004674
I
0.973
Bra016891
Brassica rapa
Bra016891
I
0.968
Bo4g191350
Brassica oleracea
Bo4g191350
I
0.968
Lus10021034.g
Linum usitatissimum
Lus10021034.g
I
0.924
Lus10023818.g
Linum usitatissimum
Lus10023818.g
I
0.924
Pm002693
Prunus mume
Pm002693
I
0.909
MDP0000297978
Malus domestica
MDP0000297978
I
0.909
Aquca_009_00161
Aquilegia coerulea
Aquca_009_00161
I
0.909
PRUPE_ppa007056mg
Prunus persica
PRUPE_ppa007056mg
I
0.909
PRUPE_ppa021582mg
Prunus persica
PRUPE_ppa021582mg
I
0.909
Lus10012020.g
Linum usitatissimum
Lus10012020.g
I
0.905
Lus10016275.g
Linum usitatissimum
Lus10016275.g
I
0.905
Bra004363
Brassica rapa
Bra004363
N
0.904
Ca_24655
Cicer arietinum
Ca_24655
I
0.904
Bo6g108620
Brassica oleracea
Bo6g108620
N
0.903
gene22660-v1.0-hybrid
Fragaria vesca
gene22660-v1.0-hybrid
I
0.901
orange1.1g009653m.g
Citrus sinensis
orange1.1g009653m.g
I
0.894
Ciclev10031270m.g
Citrus clementina
Ciclev10031270m.g
I
0.894
MDP0000589558
Malus domestica
MDP0000589558
I
0.892
PRUPE_ppa017695mg
Prunus persica
PRUPE_ppa017695mg
I
0.892
Pm030597
Prunus mume
Pm030597
I
0.892
Thhalv10018638m.g
Eutrema salsugineum
Thhalv10018638m.g
I
0.891
gene04565-v1.0-hybrid
Fragaria vesca
gene04565-v1.0-hybrid
I
0.891
Carubv10020369m.g
Capsella rubella
Carubv10020369m.g
I
0.891
Cagra.0537s0003
Capsella grandiflora
Cagra.0537s0003
I
0.891
Pavir.J11258
Panicum virgatum
Pavir.J11258
I
0.889
Pavir.Ba01711
Panicum virgatum
Pavir.Ba01711
I
0.889
Si030195m.g
Setaria italica
Si030195m.g
I
0.889
fgenesh1_pg.C_scaffold_2001253
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001253
I
0.887
TCM_024873
Theobroma cacao
TCM_024873
I
0.886
29269.m000250
Ricinus communis
29269.m000250
I
0.886
Eucgr.A02441
Eucalyptus grandis
Eucgr.A02441
I
0.886
VIT_08s0007g06270
Vitis vinifera
VIT_08s0007g06270
I
0.886