Carubv10026434m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10026434m.g T323424_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026434m SBP 180 254
Carubv10026848m SBP 148 222

Links

Other SBP family TFs
Other Capsella rubella TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra033671 Brassica rapa Bra033671 N 0.987
Bra027478 Brassica rapa Bra027478 N 0.987
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.987
SPL2 Arabidopsis thaliana AT5G43270 N 0.987
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.987
Bo9g058970 Brassica oleracea Bo9g058970 N 0.987
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.987
Bo7g065290 Brassica oleracea Bo7g065290 N 0.986
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.984
Pm007020 Prunus mume Pm007020 N 0.978
PK16953.1 Cannabis sativa PK16953.1 N 0.977
29929.m004641 Ricinus communis 29929.m004641 I 0.977
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.976
MDP0000155354 Malus domestica MDP0000155354 N 0.976
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.973
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.973
mgf019346m Mimulus guttatus mgf019346m I 0.970
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.964
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.963
TCM_008772 Theobroma cacao TCM_008772 N 0.963
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.963
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.963
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.961
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.961
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.961
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.961
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.960
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.959
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.958
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.957
Ca_11356 Cicer arietinum Ca_11356 I 0.956
mgf010397m Mimulus guttatus mgf010397m N 0.955
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.952
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.952
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.951
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.950
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.947
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.947
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.946
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.946
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.946
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.946
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.946
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.946
SPL4 Oryza sativa OS02G0174100 N 0.946
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.946
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.946
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.946
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.946
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.944
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.944
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.944
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.941
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.941
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.941
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.940
OB02G14840 Oryza brachyantha OB02G14840 N 0.939
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.938
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.934
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.934
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.931
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.930
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.927
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.923
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.923
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.923
OB02G12930 Oryza brachyantha OB02G12930 N 0.923
Si017749m.g Setaria italica Si017749m.g N 0.921
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.920
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.919
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.919
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.919
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.919
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.919
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.919
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.917
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.917
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.916
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.916
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.916
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.916
OBART02G03260 Oryza barthii OBART02G03260 N 0.916
SPL3 Oryza indica BGIOSGA007499 N 0.916
OS02G0139400 Oryza sativa OS02G0139400 N 0.916
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.916
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.914
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.911
F775_31908 Aegilops tauschii F775_31908 N 0.910
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.910
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.909
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.909
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.907
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.905
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.905
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.904
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.904
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.904
MDP0000249364 Malus domestica MDP0000249364 N 0.904
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.900
SPL12 Oryza indica BGIOSGA020577 N 0.896
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.896
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.896
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.896
OBART06G26610 Oryza barthii OBART06G26610 N 0.896
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.896
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.896
SPL12 Oryza sativa OS06G0703500 N 0.896
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.896
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.895
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.894
Bo5g051980 Brassica oleracea Bo5g051980 I 0.889