CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Ciclev10019546m.g
(
Citrus clementina
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Ciclev10019546m.g
T323434_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.908
0.800
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.901
0.680
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN
NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.899
0.720
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN
NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.897
0.733
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.888
0.720
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.888
0.720
SPL14
M11270_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.888
0.720
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10019545m
SBP
172
246
CQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKP
Ciclev10019546m
SBP
172
246
CQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Citrus clementina
TFs
333 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy