Eucgr.B03500 (Eucalyptus grandis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Eucgr.B03500 T323451_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.943 0.867
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.898 0.853
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.898 0.853
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B03500.1 SBP 188 262

Links

Other SBP family TFs
Other Eucalyptus grandis TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.986
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.980
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.980
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.979
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.979
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.979
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.979
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.978
29929.m004641 Ricinus communis 29929.m004641 I 0.974
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.971
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.969
mgf010397m Mimulus guttatus mgf010397m N 0.967
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.966
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.966
mgf019346m Mimulus guttatus mgf019346m I 0.964
TCM_008772 Theobroma cacao TCM_008772 N 0.963
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.958
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.957
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.955
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.955
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.955
Si017749m.g Setaria italica Si017749m.g N 0.954
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.952
PK16953.1 Cannabis sativa PK16953.1 N 0.951
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.950
Bra030041 Brassica rapa Bra030041 I 0.950
Bo7g049940 Brassica oleracea Bo7g049940 I 0.949
Bo7g065290 Brassica oleracea Bo7g065290 N 0.948
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.947
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.946
SPL2 Arabidopsis thaliana AT5G43270 N 0.946
Bra027478 Brassica rapa Bra027478 N 0.946
Bra033671 Brassica rapa Bra033671 N 0.946
Bo9g058970 Brassica oleracea Bo9g058970 N 0.946
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.946
MDP0000155354 Malus domestica MDP0000155354 N 0.945
Pm007020 Prunus mume Pm007020 N 0.945
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.944
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.944
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.944
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.944
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.944
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.944
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.943
SPL10 Arabidopsis thaliana AT1G27370 D 0.943
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.941
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.941
Ca_11356 Cicer arietinum Ca_11356 I 0.940
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.937
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.937
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.937
Bra032823 Brassica rapa Bra032823 I 0.937
Bo5g051980 Brassica oleracea Bo5g051980 I 0.937
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.936
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.936
Bra030040 Brassica rapa Bra030040 I 0.934
Bo5g051970 Brassica oleracea Bo5g051970 I 0.934
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.934
Bo7g049950 Brassica oleracea Bo7g049950 I 0.931
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.929
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.929
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.929
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.927
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.927
Ca_08506 Cicer arietinum Ca_08506 I 0.926
Bra010949 Brassica rapa Bra010949 I 0.923
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.921
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.920
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.920
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.920
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.919
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.918
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.918
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.915
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.914
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.909
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.908
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.908
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.907
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.907
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.906
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.906
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.906
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.902
MDP0000249364 Malus domestica MDP0000249364 N 0.902
OB02G12930 Oryza brachyantha OB02G12930 N 0.901
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.901
OB02G14840 Oryza brachyantha OB02G14840 N 0.899
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.899
SPL11 Arabidopsis thaliana AT1G27360 D 0.898
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.897
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.897
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.897
OBART06G26610 Oryza barthii OBART06G26610 N 0.897
SPL12 Oryza indica BGIOSGA020577 N 0.897
SPL12 Oryza sativa OS06G0703500 N 0.897
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.897
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.897
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.897
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.896
SPL4 Oryza sativa OS02G0174100 N 0.896
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.896
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.896
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.896
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.896
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.896
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.896
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.896
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.895
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.895
OBART02G03260 Oryza barthii OBART02G03260 N 0.895
SPL3 Oryza indica BGIOSGA007499 N 0.895
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.895
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.895
OS02G0139400 Oryza sativa OS02G0139400 N 0.895
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.895
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.894
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.894
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.891
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.887