CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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evm.TU.supercontig_43.66
(
Carica papaya
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
evm.TU.supercontig_43.66
T323473_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.907
0.827
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.66
SBP
182
256
CQVEGCNQDLSSAKDYHRKHRVCESHSKCPKVIVAGHERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKP
Links
Other
SBP
family TFs
Other
Carica papaya
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy