gene22660-v1.0-hybrid (Fragaria vesca)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 gene22660-v1.0-hybrid T323484_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.941 0.773
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.921 0.680
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.917 0.720
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.917 0.720
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.917 0.720
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.894 0.653
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.889 0.707
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN

NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.889 0.813
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH

DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.889 0.813
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA

TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.889 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna22660.1-v1.0-hybrid SBP 79 153

Links

Other SBP family TFs
Other Fragaria vesca TFs

Invalid Input OrderBy

417 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action