gene29149-v1.0-hybrid (Fragaria vesca)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 gene29149-v1.0-hybrid T323488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.960 0.907
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.957 0.907
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.957 0.907
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.957 0.907
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.956 0.907
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.956 0.813
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.949 0.800
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.948 0.933
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.943 0.773
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.943 0.773
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.943 0.773
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.931 0.747
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.912 0.680
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.906 0.693
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.901 0.667
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.901 0.667
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.901 0.667
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.901 0.693
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.901 0.693
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.901 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna29149.1-v1.0-hybrid SBP 152 226

Links

Other SBP family TFs
Other Fragaria vesca TFs

361 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMSG_04730 Thecamonas trahens AMSG_04730 I 0.000
augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 I 0.000
augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 I 0.000
BGLB008554 Biomphalaria glabrata BGLB008554 I 0.000
CapteG228062 Capitella teleta CapteG228062 I 0.000
cgd8_1850 Cryptosporidium parvum cgd8_1850 I 0.000
CGI_10012373 Crassostrea gigas CGI_10012373 I 0.000
Chro.80214 Cryptosporidium hominis Chro.80214 I 0.000
D918_07169 Trichuris suis D918_07169 I 0.000
DME_0000497501 Dracunculus medinensis DME_0000497501 I 0.000
Dp Drosophila melanogaster FBgn0011763 I 0.000
dpl-1 Caenorhabditis elegans WBGene00001061 D 0.000
ENSAMXG00000016202 Astyanax mexicanus ENSAMXG00000016202 I 0.000
ENSPMAG00000005432 Petromyzon marinus ENSPMAG00000005432 I 0.000
fgenesh1_pm.chr_10_#_45 Ostreococcus RCC809 fgenesh1_pm.chr_10_#_45 I 0.000
GA18332 Drosophila pseudoobscura FBgn0078337 I 0.000
GD10952 Drosophila simulans FBgn0182715 I 0.000
GE12526 Drosophila yakuba FBgn0230263 I 0.000
GF11948 Drosophila ananassae FBgn0088987 I 0.000
GG20367 Drosophila erecta FBgn0112558 I 0.000
GH20730 Drosophila grimshawi FBgn0128193 I 0.000
GI20813 Drosophila mojavensis FBgn0143548 I 0.000
GJ20546 Drosophila virilis FBgn0207686 I 0.000
GK22007 Drosophila willistoni FBgn0223992 I 0.000
GM21454 Drosophila sechellia FBgn0176335 I 0.000
gw1.2.505.1 Chlorella NC64A gw1.2.505.1 I 0.000
LCUP009030 Lucilia cuprina LCUP009030 I 0.000
LjSGA_030786.1 Lotus japonicus LjSGA_030786.1 I 0.000
LotgiG114027 Lottia gigantea LotgiG114027 I 0.000
MDOA008269 Musca domestica MDOA008269 I 0.000
MESCA004548 Megaselia scalaris MESCA004548 I 0.000
ML07764a Mnemiopsis leidyi ML07764a I 0.000
Ogr00419 Ophisaurus gracilis Ogr00419 I 0.000
OLONG_008291 Oryza longistaminata OLONG_008291 I 0.000
OSTLU_38105 Ostreococcus lucimarinus OSTLU_38105 I 0.000
PHUM136260 Pediculus humanus PHUM136260 I 0.000
Pvit_13706 Pogona vitticeps Pvit_13706 I 0.000
Sakowv30008448m.g Saccoglossus kowalevskii Sakowv30008448m.g I 0.000
SPU_006312 Strongylocentrotus purpuratus SPU_006312 I 0.000
SPU_007710 Strongylocentrotus purpuratus SPU_007710 I 0.000
tfdp1b Danio rerio ENSDARG00000016304 I 0.000
TMUE_s0088001900 Trichuris muris TMUE_s0088001900 I 0.000
Traes_3AL_D7DE23839 Triticum aestivum Traes_3AL_D7DE23839 I 0.000
Traes_3DL_1E9DECCEA Triticum aestivum Traes_3DL_1E9DECCEA I 0.000
TTRE_0000680801 Trichuris trichiura TTRE_0000680801 I 0.000
TVAG_077130 Trichomonas vaginalis TVAG_077130 I 0.000