Gorai.005G056500 (Gossypium raimondii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Gorai.005G056500 T323502_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.948 0.813
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.948 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G056500.1 SBP 142 216
Gorai.005G056500.2 SBP 142 216
Gorai.005G056500.3 SBP 30 62

Links

Other SBP family TFs
Other Gossypium raimondii TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_021101 Theobroma cacao TCM_021101 I 0.971
mgf004695m Mimulus guttatus mgf004695m I 0.970
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.969
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.965
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.965
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.964
Cla022022 Citrullus lanatus Cla022022 I 0.964
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.964
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.962
F775_04392 Aegilops tauschii F775_04392 I 0.962
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.962
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.961
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.961
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.961
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.961
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.960
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.960
Bo9g154530 Brassica oleracea Bo9g154530 I 0.959
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.959
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.959
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.959
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.959
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.959
Bra002188 Brassica rapa Bra002188 I 0.959
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.959
29726.m003959 Ricinus communis 29726.m003959 I 0.958
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.957
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.957
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.957
OBART05G16150 Oryza barthii OBART05G16150 I 0.957
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.957
OB05G24080 Oryza brachyantha OB05G24080 I 0.957
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.957
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.957
SPL9 Oryza sativa OS05G0408200 I 0.957
Si021754m.g Setaria italica Si021754m.g I 0.957
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.957
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.957
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.956
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.955
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.955
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.954
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.953
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.953
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.952
MDP0000271587 Malus domestica MDP0000271587 I 0.950
SPL7 Arabidopsis thaliana AT5G18830 D 0.948
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.947
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.947
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.945
Pm008092 Prunus mume Pm008092 I 0.945
Bo00629s160 Brassica oleracea Bo00629s160 I 0.945
Bra023695 Brassica rapa Bra023695 I 0.945
MDP0000195461 Malus domestica MDP0000195461 I 0.944
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.944
Ca_00550 Cicer arietinum Ca_00550 I 0.944
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.943
PK29723.1 Cannabis sativa PK29723.1 I 0.942
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.941
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.936
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.931
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.925
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.921
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.887