Gorai.011G183800 (Gossypium raimondii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Gorai.011G183800 T323517_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN

NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.957 0.813
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG

CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.957 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G183800.1 SBP 146 220
Gorai.011G183800.2 SBP 146 220

Links

Other SBP family TFs
Other Gossypium raimondii TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_021101 Theobroma cacao TCM_021101 I 0.980
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.974
Cla022022 Citrullus lanatus Cla022022 I 0.974
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.971
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.971
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.971
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.970
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.970
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.969
F775_04392 Aegilops tauschii F775_04392 I 0.969
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.969
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.969
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.968
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.968
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.968
29726.m003959 Ricinus communis 29726.m003959 I 0.967
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.966
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.966
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.966
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.966
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.966
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.966
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.966
Bo9g154530 Brassica oleracea Bo9g154530 I 0.966
Bra002188 Brassica rapa Bra002188 I 0.966
OB05G24080 Oryza brachyantha OB05G24080 I 0.965
OBART05G16150 Oryza barthii OBART05G16150 I 0.965
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.965
SPL9 Oryza sativa OS05G0408200 I 0.965
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.965
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.965
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.965
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.965
mgf004695m Mimulus guttatus mgf004695m I 0.965
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.965
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.965
Si021754m.g Setaria italica Si021754m.g I 0.965
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.965
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.964
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.963
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.963
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.963
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.961
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.961
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.960
PK29723.1 Cannabis sativa PK29723.1 I 0.959
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.958
SPL7 Arabidopsis thaliana AT5G18830 D 0.957
Ca_00550 Cicer arietinum Ca_00550 I 0.955
MDP0000271587 Malus domestica MDP0000271587 I 0.948
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.945
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.945
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.943
Pm008092 Prunus mume Pm008092 I 0.943
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.941
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.939
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.935
Bra023695 Brassica rapa Bra023695 I 0.934
Bo00629s160 Brassica oleracea Bo00629s160 I 0.934
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.930
MDP0000195461 Malus domestica MDP0000195461 I 0.929
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.929
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.922