Lus10011356.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10011356.g T323531_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.928 0.853
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10011356 SBP 136 210

Links

Other SBP family TFs
Other Linum usitatissimum TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL10 Arabidopsis thaliana AT1G27370 D 0.928
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.895
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.918
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.918
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.895
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.937
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.980
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.966
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.980
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.970
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.926
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.918
Ca_08506 Cicer arietinum Ca_08506 I 0.906
Ca_11356 Cicer arietinum Ca_11356 I 0.924
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.968
29929.m004641 Ricinus communis 29929.m004641 I 0.970
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.956
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.968
mgf019346m Mimulus guttatus mgf019346m I 0.959
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.960
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.934
Bo7g049950 Brassica oleracea Bo7g049950 I 0.924
Bra032823 Brassica rapa Bra032823 I 0.920
Bo5g051970 Brassica oleracea Bo5g051970 I 0.916
Bra030041 Brassica rapa Bra030041 I 0.930
Bra030040 Brassica rapa Bra030040 I 0.930
Bo5g051980 Brassica oleracea Bo5g051980 I 0.933
Bo7g049940 Brassica oleracea Bo7g049940 I 0.928
Bra010949 Brassica rapa Bra010949 I 0.919
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.926
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.968
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.965
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.926
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.968
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.948
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.901
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.887
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.937
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.941
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.908
Pm007020 Prunus mume Pm007020 N 0.942
mgf010397m Mimulus guttatus mgf010397m N 0.981
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.936
PK16953.1 Cannabis sativa PK16953.1 N 0.944
MDP0000155354 Malus domestica MDP0000155354 N 0.942
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.953
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.934
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.953
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.936
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.941
MDP0000249364 Malus domestica MDP0000249364 N 0.897
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.941
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.928
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.943
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.901
TCM_008772 Theobroma cacao TCM_008772 N 0.944
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.912
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.891
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.890
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.916
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.916
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.910
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.909
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.909
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.889
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.889
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.897
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.913
Bra033671 Brassica rapa Bra033671 N 0.943
Bra027478 Brassica rapa Bra027478 N 0.943
Bo9g058970 Brassica oleracea Bo9g058970 N 0.943
Bo7g065290 Brassica oleracea Bo7g065290 N 0.941
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.891
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.887
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.909
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.909
Si017749m.g Setaria italica Si017749m.g N 0.951
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.943
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.909
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.939
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.904
SPL4 Oryza sativa OS02G0174100 N 0.891
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.891
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.891
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.891
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.891
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.891
OB02G12930 Oryza brachyantha OB02G12930 N 0.896
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.912
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.904
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.891
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.915
SPL2 Arabidopsis thaliana AT5G43270 N 0.943