MDP0000271587 (Malus domestica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 MDP0000271587 T323581_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN

NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.946 0.827
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG

CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.946 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000271587 SBP 142 216

Links

Other SBP family TFs
Other Malus domestica TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.979
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.973
Pm008092 Prunus mume Pm008092 I 0.973
MDP0000195461 Malus domestica MDP0000195461 I 0.973
Bra023695 Brassica rapa Bra023695 I 0.971
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.967
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.967
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.967
Cla022022 Citrullus lanatus Cla022022 I 0.967
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.962
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.958
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.958
Bra002188 Brassica rapa Bra002188 I 0.957
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.957
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.957
Bo9g154530 Brassica oleracea Bo9g154530 I 0.957
Bo00629s160 Brassica oleracea Bo00629s160 I 0.957
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.957
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.957
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.957
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.957
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.957
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.957
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.957
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.955
PK29723.1 Cannabis sativa PK29723.1 I 0.955
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.955
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.955
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.953
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.952
TCM_021101 Theobroma cacao TCM_021101 I 0.952
mgf004695m Mimulus guttatus mgf004695m I 0.952
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.952
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.951
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.951
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.951
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.951
Si021754m.g Setaria italica Si021754m.g I 0.951
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.951
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.950
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.949
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.948
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.948
OBART05G16150 Oryza barthii OBART05G16150 I 0.947
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.947
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.947
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.947
OB05G24080 Oryza brachyantha OB05G24080 I 0.947
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.947
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.947
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.947
SPL9 Oryza sativa OS05G0408200 I 0.947
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.947
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.947
29726.m003959 Ricinus communis 29726.m003959 I 0.946
SPL7 Arabidopsis thaliana AT5G18830 D 0.946
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.945
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.944
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.942
F775_04392 Aegilops tauschii F775_04392 I 0.933
Ca_00550 Cicer arietinum Ca_00550 I 0.926
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.924
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.903
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.903
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.900