CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000297978
(
Malus domestica
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
MDP0000297978
T323582_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.926
0.773
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN
NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.899
0.680
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.897
0.667
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN
NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.897
0.693
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN
NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.893
0.693
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG
CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.890
0.680
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN
NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.889
0.827
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.889
0.827
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.889
0.827
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.888
0.707
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.888
0.707
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.888
0.707
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.887
0.693
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.887
0.693
SPL14
M11270_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.887
0.693
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000297978
SBP
81
155
CQVEGCQVDLSDAKAYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Malus domestica
TFs
420 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy