Pavir.Ab00520 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Ab00520 T323613_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN

NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.937 0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN

NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.929 0.787
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW

WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.919 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00520.1.p SBP 212 286

Links

Other SBP family TFs
Other Panicum virgatum TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.979
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.979
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.979
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.977
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.976
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.976
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.976
SPL10 Oryza sativa OS06G0659100 I 0.976
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.976
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.976
OB06G31100 Oryza brachyantha OB06G31100 I 0.976
Si006559m.g Setaria italica Si006559m.g I 0.976
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.976
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.976
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.976
MLOC_326 Hordeum vulgare MLOC_326 I 0.976
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.976
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.976
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.976
SPL10 Oryza indica BGIOSGA023408 I 0.976
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.975
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.974
OB02G15090 Oryza brachyantha OB02G15090 I 0.974
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.973
Si017338m.g Setaria italica Si017338m.g I 0.969
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.969
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.969
OBART06G23500 Oryza barthii OBART06G23500 I 0.965
SPL5 Oryza sativa OS02G0177300 I 0.960
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.960
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.960
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.960
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.960
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.957
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.955
Si022315m.g Setaria italica Si022315m.g I 0.954
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.954
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.954
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.954
SPL8 Oryza sativa OS04G0656500 I 0.954
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.954
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.954
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.954
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.954
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.954
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.954
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.954
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.954
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.954
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.954
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.954
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.954
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.954
OBART04G27990 Oryza barthii OBART04G27990 I 0.954
OB04G34990 Oryza brachyantha OB04G34990 I 0.954
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.952
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.950
TRIUR3_34424 Triticum urartu TRIUR3_34424 N 0.948
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.944
F775_00761 Aegilops tauschii F775_00761 I 0.941
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.940
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.939
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.937
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.933
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.933
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.929
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.928
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.924
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.920
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.920
Bra032662 Brassica rapa Bra032662 I 0.919
Bo5g001290 Brassica oleracea Bo5g001290 I 0.919
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.919
Bo8g118210 Brassica oleracea Bo8g118210 I 0.919
Bra033221 Brassica rapa Bra033221 I 0.919
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.919
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.919
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.919
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.919
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.919
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.919
SPL8 Arabidopsis thaliana AT1G02065 D 0.919
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.918
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.917
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.914
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.914
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.914
30174.m008803 Ricinus communis 30174.m008803 I 0.914
PK25779.1 Cannabis sativa PK25779.1 I 0.914
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.914
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.914
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.914
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.914
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.914
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.914
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.914
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.914
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.914
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.914
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.914
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.914
TCM_005622 Theobroma cacao TCM_005622 I 0.914
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.914
Ca_18942 Cicer arietinum Ca_18942 I 0.914
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.913
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.913
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.913
mgf016085m Mimulus guttatus mgf016085m I 0.912
MDP0000803116 Malus domestica MDP0000803116 I 0.912
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.911
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.911
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.911
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.910
Cla006776 Citrullus lanatus Cla006776 I 0.910
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.907
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.907
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.903
Cla020006 Citrullus lanatus Cla020006 I 0.902
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.899
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.899
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.899
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.895
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.895
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.894
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.890
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.889
Traes_7DL_2D8356B05 Triticum aestivum Traes_7DL_2D8356B05 N 0.888
F775_20508 Aegilops tauschii F775_20508 N 0.888
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.886