CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ab00520
(
Panicum virgatum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Pavir.Ab00520
T323613_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN
NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.937
0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN
NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.929
0.787
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.919
0.787
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ab00520.1.p
SBP
212
286
CQAEGCKADLSAAKHYHRRHKVCEYHAKAAAVAAAGKQQRFCQQCSRFHVLAEFDDAKRSCRKRLTEHNRRRRKP
Links
Other
SBP
family TFs
Other
Panicum virgatum
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy