Pavir.Ba01534 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Ba01534 T323617_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01534.1.p SBP 73 147
Pavir.Ba01534.2.p SBP 1 37

Links

Other SBP family TFs
Other Panicum virgatum TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.986
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.985
Si013747m.g Setaria italica Si013747m.g N 0.985
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.985
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.976
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.976
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.976
SPL16 Oryza sativa OS08G0531600 I 0.974
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.974
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.974
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.972
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.969
SPL19 Oryza sativa OS11G0496600 I 0.969
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.969
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.968
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.967
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.967
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.961
OBART09G15750 Oryza barthii OBART09G15750 I 0.960
Sb07g026220 Sorghum bicolor Sb07g026220 N 0.960
SPL18 Oryza sativa OS09G0507100 I 0.960
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.960
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.960
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.960
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.959
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.958
Si001804m.g Setaria italica Si001804m.g I 0.958
GRMZM2G101511 Zea mays GRMZM2G101511 N 0.958
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.958
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.955
Lus10011348.g Linum usitatissimum Lus10011348.g I 0.954
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.953
Pm025028 Prunus mume Pm025028 I 0.953
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.953
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.953
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.953
TCM_011483 Theobroma cacao TCM_011483 I 0.951
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.949
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.946
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.945
ORUFI08G24030 Oryza rufipogon ORUFI08G24030 N 0.944
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.944
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.941
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.940
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.940
Cla001541 Citrullus lanatus Cla001541 I 0.939
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.939
MDP0000193702 Malus domestica MDP0000193702 I 0.938
MDP0000119458 Malus domestica MDP0000119458 I 0.938
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.938
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.937
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.937
MDP0000778465 Malus domestica MDP0000778465 I 0.935
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.935
Ca_19449 Cicer arietinum Ca_19449 I 0.935
MDP0000146640 Malus domestica MDP0000146640 I 0.935
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.935
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.935
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.935
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.935
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.935
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.933
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.933
TCM_014330 Theobroma cacao TCM_014330 I 0.933
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.933
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.933
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.932
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.932
Cla018827 Citrullus lanatus Cla018827 I 0.932
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.932
mgf003797m Mimulus guttatus mgf003797m I 0.932
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.932
30174.m009082 Ricinus communis 30174.m009082 I 0.932
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.932
Cla019331 Citrullus lanatus Cla019331 I 0.932
mgf010913m Mimulus guttatus mgf010913m I 0.932
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.931
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.931
Si026656m.g Setaria italica Si026656m.g I 0.931
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.931
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.930
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.930
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.930
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.930
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.930
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.930
30138.m003942 Ricinus communis 30138.m003942 I 0.930
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.930
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.930
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.930
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.929
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.929
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.928
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.927
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.927
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.927
PK17790.1 Cannabis sativa PK17790.1 I 0.926
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.925
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.925
Bo3g042890 Brassica oleracea Bo3g042890 I 0.924
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.924
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.923
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.922
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.921
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.920
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.920
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.919
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.919
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.918
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.917
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.916
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.916
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.915
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.912
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.912
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.912
OS01G0922600 Oryza sativa OS01G0922600 I 0.912
MDP0000142582 Malus domestica MDP0000142582 N 0.912
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.912
TCM_008671 Theobroma cacao TCM_008671 I 0.911
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.911
SPL6 Arabidopsis thaliana AT1G69170 I 0.911
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.909
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.909
OBART01G42150 Oryza barthii OBART01G42150 I 0.909
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.909
Pm030597 Prunus mume Pm030597 I 0.909
PK19500.1 Cannabis sativa PK19500.1 I 0.908
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.907
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.906
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.906
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.906
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.905
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.903
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.903
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.902
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.902
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.901
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.901
MDP0000589558 Malus domestica MDP0000589558 I 0.900
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.899
MDP0000171877 Malus domestica MDP0000171877 I 0.898
MDP0000246046 Malus domestica MDP0000246046 I 0.898
Ca_24655 Cicer arietinum Ca_24655 I 0.898
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.898
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.898
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.898
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.895
Ca_05711 Cicer arietinum Ca_05711 I 0.894
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.894
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.893
PK02140.1 Cannabis sativa PK02140.1 I 0.893
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.893
29929.m004627 Ricinus communis 29929.m004627 I 0.893
TCM_014668 Theobroma cacao TCM_014668 I 0.892
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.892
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.892
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.891
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.891
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.891
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.890
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.890
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.890
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.890
Bra038324 Brassica rapa Bra038324 I 0.889
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.889
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.888
Si010262m.g Setaria italica Si010262m.g I 0.888
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.887
Pm024528 Prunus mume Pm024528 I 0.887
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.887
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.887
Cla002666 Citrullus lanatus Cla002666 I 0.887
Bo2g062840 Brassica oleracea Bo2g062840 I 0.886