CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Fb01946
(
Panicum virgatum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Pavir.Fb01946
T323631_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.940
0.760
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN
NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.923
0.693
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.916
0.693
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.916
0.693
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.916
0.693
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.895
0.653
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN
NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.887
0.667
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fb01946.1.p
SBP
85
159
CQVEGCNVDLTGAKTYHCRHKVCAMHSKAPLVVVNGIEQRFCQQCSRFHQLHEFDQQKRSCRRRLMGHNERRRRP
Pavir.Fb01946.2.p
SBP
85
159
CQVEGCNVDLTGAKTYHCRHKVCAMHSKAPLVVVNGIEQRFCQQCSRFHQLHEFDQQKRSCRRRLMGHNERRRRP
Pavir.Fb01946.5.p
SBP
42
73
YIPRFHQLHEFDQQKRSCRRRLMGHNERRRRP
Links
Other
SBP
family TFs
Other
Panicum virgatum
TFs
268 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy