Pavir.J00965 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.J00965 T323639_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN

NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.971 0.827
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG

CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.971 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00965.1.p SBP 180 254

Links

Other SBP family TFs
Other Panicum virgatum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_04392 Aegilops tauschii F775_04392 I 0.977
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.977
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.942
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.972
SPL7 Arabidopsis thaliana AT5G18830 D 0.971
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.972
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.968
Bo9g154530 Brassica oleracea Bo9g154530 I 0.972
Bo00629s160 Brassica oleracea Bo00629s160 I 0.947
Bra002188 Brassica rapa Bra002188 I 0.972
Bra023695 Brassica rapa Bra023695 I 0.947
PK29723.1 Cannabis sativa PK29723.1 I 0.958
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.972
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.972
Ca_00550 Cicer arietinum Ca_00550 I 0.962
Cla022022 Citrullus lanatus Cla022022 I 0.974
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.978
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.978
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.974
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.979
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.972
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.952
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.975
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.960
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.968
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.983
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.970
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.970
MDP0000271587 Malus domestica MDP0000271587 I 0.947
MDP0000195461 Malus domestica MDP0000195461 I 0.937
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.975
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.975
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.942
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.965
mgf004695m Mimulus guttatus mgf004695m I 0.962
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.973
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.960
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.975
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.970
OBART05G16150 Oryza barthii OBART05G16150 I 0.983
OB05G24080 Oryza brachyantha OB05G24080 I 0.983
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.983
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.983
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.983
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.982
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.983
SPL9 Oryza sativa OS05G0408200 I 0.983
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.980
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.965
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.953
Pm008092 Prunus mume Pm008092 I 0.952
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.952
29726.m003959 Ricinus communis 29726.m003959 I 0.976
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.953
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.932
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.902
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.902
Si021754m.g Setaria italica Si021754m.g I 0.983
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.975
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.975
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.983
TCM_021101 Theobroma cacao TCM_021101 I 0.974
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.981
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.978
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.983