Pavir.J03653 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.J03653 T323642_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN

NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.972 0.827
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG

CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.972 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03653.1.p SBP 172 246

Links

Other SBP family TFs
Other Panicum virgatum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.983
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.983
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.983
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.983
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.983
SPL9 Oryza sativa OS05G0408200 I 0.983
OB05G24080 Oryza brachyantha OB05G24080 I 0.983
OBART05G16150 Oryza barthii OBART05G16150 I 0.983
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.983
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.983
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.982
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.981
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.980
Si021754m.g Setaria italica Si021754m.g I 0.979
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.979
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.978
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.977
F775_04392 Aegilops tauschii F775_04392 I 0.977
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.976
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.976
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.975
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.975
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.975
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.974
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.974
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.974
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.974
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.974
29726.m003959 Ricinus communis 29726.m003959 I 0.973
Cla022022 Citrullus lanatus Cla022022 I 0.973
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.973
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.973
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.973
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.973
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.973
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.973
SPL7 Arabidopsis thaliana AT5G18830 D 0.972
Bra002188 Brassica rapa Bra002188 I 0.971
TCM_021101 Theobroma cacao TCM_021101 I 0.971
Bo9g154530 Brassica oleracea Bo9g154530 I 0.971
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.970
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.970
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.968
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.964
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.964
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.964
mgf004695m Mimulus guttatus mgf004695m I 0.961
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.959
Ca_00550 Cicer arietinum Ca_00550 I 0.957
PK29723.1 Cannabis sativa PK29723.1 I 0.956
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.955
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.952
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.952
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.951
Pm008092 Prunus mume Pm008092 I 0.950
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.950
Bra023695 Brassica rapa Bra023695 I 0.946
Bo00629s160 Brassica oleracea Bo00629s160 I 0.946
MDP0000271587 Malus domestica MDP0000271587 I 0.945
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.944
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.941
MDP0000195461 Malus domestica MDP0000195461 I 0.938
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.930
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.924
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.903