Pavir.J20730 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.J20730 T323645_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J20730.1.p SBP 61 135

Links

Other SBP family TFs
Other Panicum virgatum TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.987
Si017749m.g Setaria italica Si017749m.g N 0.986
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.978
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.974
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.974
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.974
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.974
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.974
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.973
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.972
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.972
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.972
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.970
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.969
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.969
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.969
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.969
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.968
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.968
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.968
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.968
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.968
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.968
SPL4 Oryza sativa OS02G0174100 N 0.968
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.968
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.967
OB02G14840 Oryza brachyantha OB02G14840 N 0.966
mgf010397m Mimulus guttatus mgf010397m N 0.963
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.963
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.961
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.961
OBART06G26610 Oryza barthii OBART06G26610 N 0.961
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.961
SPL12 Oryza sativa OS06G0703500 N 0.961
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.961
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.961
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.961
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.961
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.961
SPL12 Oryza indica BGIOSGA020577 N 0.961
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.961
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.961
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.961
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.960
29929.m004641 Ricinus communis 29929.m004641 I 0.960
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.959
OB06G34330 Oryza brachyantha OB06G34330 N 0.956
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.956
Si017520m.g Setaria italica Si017520m.g N 0.955
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.955
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.954
Pavir.Aa03225 Panicum virgatum Pavir.Aa03225 N 0.954
Pavir.Ab00358 Panicum virgatum Pavir.Ab00358 N 0.954
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.954
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.953
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.953
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.953
F775_31908 Aegilops tauschii F775_31908 N 0.952
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.952
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.951
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.951
mgf019346m Mimulus guttatus mgf019346m I 0.951
OB02G12930 Oryza brachyantha OB02G12930 N 0.951
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.951
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.950
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.950
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.950
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.950
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.950
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.949
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.948
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.947
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.946
OB06G31550 Oryza brachyantha OB06G31550 N 0.946
OBART06G23820 Oryza barthii OBART06G23820 N 0.946
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N 0.946
ONIVA06G27990 Oryza nivara ONIVA06G27990 N 0.946
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N 0.946
BGIOSGA020731 Oryza indica BGIOSGA020731 N 0.946
OMERI06G23750 Oryza meridionalis OMERI06G23750 N 0.946
SPL11 Oryza sativa OS06G0663500 N 0.946
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N 0.946
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.946
TCM_008772 Theobroma cacao TCM_008772 N 0.945
OS02G0139400 Oryza sativa OS02G0139400 N 0.944
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.944
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.944
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.944
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.944
OBART02G03260 Oryza barthii OBART02G03260 N 0.944
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.944
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.944
SPL3 Oryza indica BGIOSGA007499 N 0.944
Ca_11356 Cicer arietinum Ca_11356 I 0.943
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.938
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.937
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.936
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.935
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.933
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.930
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.930
PK16953.1 Cannabis sativa PK16953.1 N 0.927
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.926
SPL2 Arabidopsis thaliana AT5G43270 N 0.926
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.926
Bra033671 Brassica rapa Bra033671 N 0.926
Bo9g058970 Brassica oleracea Bo9g058970 N 0.926
Bra027478 Brassica rapa Bra027478 N 0.926
MDP0000155354 Malus domestica MDP0000155354 N 0.925
Pm007020 Prunus mume Pm007020 N 0.924
Sb10g029190 Sorghum bicolor Sb10g029190 N 0.923
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.923
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.923
Bo7g065290 Brassica oleracea Bo7g065290 N 0.923
LPERR06G19770 Leersia perrieri LPERR06G19770 N 0.922
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.920
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.916
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.906
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.905
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.898
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.890
GRMZM2G414805 Zea mays GRMZM2G414805 N 0.886