Thhalv10016816m.g (Eutrema salsugineum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Thhalv10016816m.g T323689_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN

NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.974 0.960
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH

DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.974 0.960
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA

TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.974 0.960
SPL15
M07263_2.00
Arabidopsis thaliana
DNWNTGTACGGAHN

NDTCCGTACANWNH
Dap-seq
OMalley et al.(2016)
SPL15_col_a
0.891 0.840
SPL15
M07264_2.00
Arabidopsis thaliana
DNTGTACGGAHNNNN

NNNNDTCCGTACANH
Dap-seq
OMalley et al.(2016)
SPL15_colamp_a
0.891 0.840
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016816m SBP 73 147

Links

Other SBP family TFs
Other Eutrema salsugineum TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.979
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.979
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.979
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.975
SPL9 Arabidopsis thaliana AT2G42200 D 0.974
Bo4g015800 Brassica oleracea Bo4g015800 I 0.973
Bra004674 Brassica rapa Bra004674 I 0.973
Bo4g191350 Brassica oleracea Bo4g191350 I 0.968
Bra016891 Brassica rapa Bra016891 I 0.968
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.931
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.931
MDP0000297978 Malus domestica MDP0000297978 I 0.917
Pm002693 Prunus mume Pm002693 I 0.917
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.917
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.917
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.909
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.901
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.896
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.896
Bra004363 Brassica rapa Bra004363 N 0.895
Ca_24655 Cicer arietinum Ca_24655 I 0.895
Bo6g108620 Brassica oleracea Bo6g108620 N 0.894
Carubv10017540m.g Capsella rubella Carubv10017540m.g I 0.893
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I 0.893
Bostr.20903s0042 Boechera stricta Bostr.20903s0042 I 0.893
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I 0.893
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I 0.891
Bo4g109710 Brassica oleracea Bo4g109710 I 0.891
Bo6g073290 Brassica oleracea Bo6g073290 I 0.891
SPL15 Arabidopsis thaliana AT3G57920 D 0.891
Si030195m.g Setaria italica Si030195m.g I 0.889
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.889
mgf012995m Mimulus guttatus mgf012995m I 0.889
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.889
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.886
29269.m000250 Ricinus communis 29269.m000250 I 0.886
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.886
TCM_024873 Theobroma cacao TCM_024873 I 0.886