CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10016816m.g
(
Eutrema salsugineum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Thhalv10016816m.g
T323689_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN
NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.974
0.960
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.974
0.960
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.974
0.960
SPL15
M07263_2.00
Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH
Dap-seq
OMalley et al.(2016)
SPL15_col_a
0.891
0.840
SPL15
M07264_2.00
Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH
Dap-seq
OMalley et al.(2016)
SPL15_colamp_a
0.891
0.840
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10016816m
SBP
73
147
CQVEGCGMDLTNAKGYYSRHRVCGIHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Eutrema salsugineum
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy