PK19500.1 (Cannabis sativa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 PK19500.1 T323704_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.969 0.800
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.899 0.693
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.896 0.680
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.896 0.680
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.896 0.680
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.889 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK19500.1 SBP 50 124

Links

Other SBP family TFs
Other Cannabis sativa TFs

Invalid Input OrderBy

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action