CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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PK19500.1
(
Cannabis sativa
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
PK19500.1
T323704_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.969
0.800
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.899
0.693
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.896
0.680
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.896
0.680
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.896
0.680
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.889
0.733
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK19500.1
SBP
50
124
CLVDGCNSDLTKCRDYHRRHKVCETHSKTPKVTIAGREQRFCQQCSRFHSLGEFDEEKRSCRKRLDGHNRRRRKP
Links
Other
SBP
family TFs
Other
Cannabis sativa
TFs
281 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy