PK26639.1 (Cannabis sativa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 PK26639.1 T323708_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.942 0.827
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.931 0.773
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.931 0.773
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.931 0.773
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.914 0.787
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.903 0.720
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.901 0.720
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK26639.1 SBP 59 133

Links

Other SBP family TFs
Other Cannabis sativa TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.982
Cla009788 Citrullus lanatus Cla009788 I 0.976
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.969
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.968
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.966
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.966
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.966
Pm011381 Prunus mume Pm011381 I 0.963
MDP0000158607 Malus domestica MDP0000158607 I 0.963
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.963
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.961
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.961
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.961
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.961
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.961
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.960
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.960
MDP0000861601 Malus domestica MDP0000861601 I 0.960
Ca_16243 Cicer arietinum Ca_16243 I 0.960
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.960
MDP0000156994 Malus domestica MDP0000156994 I 0.960
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.959
Cla023735 Citrullus lanatus Cla023735 I 0.956
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.956
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.955
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.954
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.953
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.953
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.952
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.951
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.951
Pm014154 Prunus mume Pm014154 I 0.951
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.950
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.950
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.950
30190.m011329 Ricinus communis 30190.m011329 I 0.950
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.948
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.948
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.947
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.947
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.947
30174.m008805 Ricinus communis 30174.m008805 I 0.947
Pm010075 Prunus mume Pm010075 I 0.946
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.946
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.946
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.946
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.946
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.945
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.945
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.945
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.945
TCM_029832 Theobroma cacao TCM_029832 I 0.945
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.945
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.944
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.944
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.944
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.944
TCM_005620 Theobroma cacao TCM_005620 I 0.944
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.942
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.942
PK22320.1 Cannabis sativa PK22320.1 D 0.942
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.942
Ca_10879 Cicer arietinum Ca_10879 I 0.941
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.941
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.941
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.941
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.941
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.940
Bra021880 Brassica rapa Bra021880 I 0.940
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.940
Si010262m.g Setaria italica Si010262m.g I 0.940
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.939
Bo4g042390 Brassica oleracea Bo4g042390 I 0.938
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.938
Bra005470 Brassica rapa Bra005470 I 0.938
29983.m003158 Ricinus communis 29983.m003158 I 0.938
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.938
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.937
Si032170m.g Setaria italica Si032170m.g I 0.937
Cla021411 Citrullus lanatus Cla021411 I 0.936
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.935
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.935
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.934
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.934
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.934
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.933
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.933
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.933
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.932
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I 0.932
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.932
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.932
Carubv10010422m.g Capsella rubella Carubv10010422m.g I 0.932
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.932
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.932
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.932
Bo3g027460 Brassica oleracea Bo3g027460 I 0.931
SPL3 Arabidopsis thaliana AT2G33810 D 0.931
mgf016414m Mimulus guttatus mgf016414m I 0.930
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.930
Cla020006 Citrullus lanatus Cla020006 I 0.930
mgf011616m Mimulus guttatus mgf011616m I 0.929
Bra022954 Brassica rapa Bra022954 I 0.929
OB04G27960 Oryza brachyantha OB04G27960 I 0.927
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.925
SPL7 Oryza sativa OS04G0551500 I 0.925
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.925
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.925
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.925
mgf025134m Mimulus guttatus mgf025134m I 0.925
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.925
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.925
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.925
OBART04G20940 Oryza barthii OBART04G20940 I 0.925
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.925
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.924
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.923
F775_02791 Aegilops tauschii F775_02791 I 0.921
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.921
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.921
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.921
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.921
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.921
mgf017351m Mimulus guttatus mgf017351m I 0.920
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.920
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.919
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.919
28211.m000132 Ricinus communis 28211.m000132 I 0.918
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.917
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.916
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.916
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.916
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.916
MDP0000865739 Malus domestica MDP0000865739 I 0.916
OBART07G15570 Oryza barthii OBART07G15570 I 0.916
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.916
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.916
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.916
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.915
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.914
SPL4 Arabidopsis thaliana AT1G53160 D 0.914
Ca_00320 Cicer arietinum Ca_00320 I 0.913
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.913
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.912
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.912
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.911
TCM_031595 Theobroma cacao TCM_031595 I 0.911
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.911
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.911
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.910
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.910
MDP0000589558 Malus domestica MDP0000589558 I 0.908
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.908
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.908
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.907
Ca_24655 Cicer arietinum Ca_24655 I 0.907
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.907
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.907
Pm017778 Prunus mume Pm017778 I 0.906
mgf000195m Mimulus guttatus mgf000195m I 0.906
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.906
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.905
Lus10009984.g Linum usitatissimum Lus10009984.g I 0.904
30076.m004574 Ricinus communis 30076.m004574 I 0.903
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.903
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.903
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.903
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.903
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.903
Ca_03548 Cicer arietinum Ca_03548 I 0.903
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.903
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.903
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.903
PK06791.1 Cannabis sativa PK06791.1 D 0.903
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.903
Bra038101 Brassica rapa Bra038101 I 0.902
TCM_004922 Theobroma cacao TCM_004922 I 0.902
SPL12 Arabidopsis thaliana AT3G60030 D 0.901
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.901
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.901
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.901
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.901
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.900
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.899
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.899
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.898
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.898
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.898
mgf009459m Mimulus guttatus mgf009459m I 0.898
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.898
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.898
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.898
TCM_008150 Theobroma cacao TCM_008150 I 0.897
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.896
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.896
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.896
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.896
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.896
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.896
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.896
MDP0000262141 Malus domestica MDP0000262141 I 0.895
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.895
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.895
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.895
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.894
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.894
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.894
Pm017777 Prunus mume Pm017777 I 0.894
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.894
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.894
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.893
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.893
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.893
Si034095m.g Setaria italica Si034095m.g I 0.893
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.893
Cla002263 Citrullus lanatus Cla002263 I 0.892
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.892
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.892
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.891
Ca_01036 Cicer arietinum Ca_01036 I 0.891
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.891
29889.m003388 Ricinus communis 29889.m003388 I 0.891
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.891
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.890
mgf001295m Mimulus guttatus mgf001295m I 0.890
OB08G27190 Oryza brachyantha OB08G27190 I 0.890
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.890
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.889
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.889
Bra041037 Brassica rapa Bra041037 I 0.889
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.889
Bo4g005730 Brassica oleracea Bo4g005730 I 0.889
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.889
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.889
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.888
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.888
Bo6g029290 Brassica oleracea Bo6g029290 I 0.888
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.888
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.887
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.887
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.887
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.887
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.887
TCM_021482 Theobroma cacao TCM_021482 I 0.887
MDP0000180408 Malus domestica MDP0000180408 I 0.887
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.886
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.886