PK29723.1 (Cannabis sativa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 PK29723.1 T323709_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.953 0.813
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.953 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK29723.1 SBP 178 252

Links

Other SBP family TFs
Other Cannabis sativa TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.972
Cla022022 Citrullus lanatus Cla022022 I 0.972
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.970
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.970
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.965
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.963
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.963
Bo9g154530 Brassica oleracea Bo9g154530 I 0.963
Bra002188 Brassica rapa Bra002188 I 0.963
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.963
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.962
TCM_021101 Theobroma cacao TCM_021101 I 0.962
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.962
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.962
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.962
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.962
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.961
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.961
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.961
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.961
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.961
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.959
OB05G24080 Oryza brachyantha OB05G24080 I 0.958
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.958
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.958
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.958
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.958
OBART05G16150 Oryza barthii OBART05G16150 I 0.958
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.958
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.958
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.958
Si021754m.g Setaria italica Si021754m.g I 0.958
SPL9 Oryza sativa OS05G0408200 I 0.958
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.958
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.958
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.958
29726.m003959 Ricinus communis 29726.m003959 I 0.957
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.957
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.957
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.957
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.956
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.956
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.955
MDP0000271587 Malus domestica MDP0000271587 I 0.955
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.954
SPL7 Arabidopsis thaliana AT5G18830 D 0.953
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.950
MDP0000195461 Malus domestica MDP0000195461 I 0.948
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.947
F775_04392 Aegilops tauschii F775_04392 I 0.946
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.945
mgf004695m Mimulus guttatus mgf004695m I 0.944
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.942
Ca_00550 Cicer arietinum Ca_00550 I 0.941
Pm008092 Prunus mume Pm008092 I 0.940
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.940
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.940
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.940
Bra023695 Brassica rapa Bra023695 I 0.928
Bo00629s160 Brassica oleracea Bo00629s160 I 0.928
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.922
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.922
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.915