AMTR_s00011p00266100 (Amborella trichopoda)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 AMTR_s00011p00266100 T323750_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERM94804 Sigma 70 258 328

Links

Other Sigma 70 family TFs
Other Amborella trichopoda TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30148.m001468 Ricinus communis 30148.m001468 N 0.915
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.915
SIGA Arabidopsis thaliana AT1G64860 N 0.873
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.831
Bo2g097550 Brassica oleracea Bo2g097550 N 0.887
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.887
Bra008513 Brassica rapa Bra008513 N 0.887
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.789
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.873
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.873
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.901
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.901
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.915
Ca_22622 Cicer arietinum Ca_22622 N 0.901
Ca_22625 Cicer arietinum Ca_22625 N 0.915
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.930
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.915
Cla006897 Citrullus lanatus Cla006897 N 0.930
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.930
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.915
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.915
F775_32229 Aegilops tauschii F775_32229 N 0.803
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.915
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.915
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.915
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.901
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.915
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.817
GRMZM2G360541 Zea mays GRMZM2G360541 N 0.703
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.803
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.873
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.873
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.845
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.800
MDP0000934360 Malus domestica MDP0000934360 N 0.944
MDP0000939377 Malus domestica MDP0000939377 N 0.944
mgf004750m Mimulus guttatus mgf004750m N 0.915
mgf015154m Mimulus guttatus mgf015154m N 0.775
mgf016433m Mimulus guttatus mgf016433m N 0.915
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.887
OB08G14150 Oryza brachyantha OB08G14150 N 0.845
OBART08G03910 Oryza barthii OBART08G03910 N 0.831
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.831
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.831
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.831
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.831
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.831
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.901
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.831
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.831
OS08G0163400 Oryza sativa OS08G0163400 N 0.831
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.831
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.845
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.930
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.873
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.887
PK03826.1 Cannabis sativa PK03826.1 N 0.915
Pm019567 Prunus mume Pm019567 N 0.944
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.901
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.930
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.944
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.915
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.915
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.915
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.817
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.873
Si013608m.g Setaria italica Si013608m.g N 0.845
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.873
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.887
TCM_025640 Theobroma cacao TCM_025640 N 0.915
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.887
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.803
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.818
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.803
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.803
SIGA Vitis vinifera VIT_16s0039g00660 N 0.930