AMTR_s00056p00209700 (Amborella trichopoda)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 AMTR_s00056p00209700 T323752_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERN15250 Sigma 70 295 365

Links

Other Sigma 70 family TFs
Other Amborella trichopoda TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_037242 Theobroma cacao TCM_037242 N 0.803
SIGC Vitis vinifera VIT_04s0008g00600 N 0.789
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.789
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.775
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.775
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.775
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.775
PK05603.1 Cannabis sativa PK05603.1 N 0.746
29794.m003368 Ricinus communis 29794.m003368 N 0.746
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.746
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.746
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.746
Pm005208 Prunus mume Pm005208 N 0.746
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.746
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.746
Ca_14896 Cicer arietinum Ca_14896 N 0.746
MDP0000135483 Malus domestica MDP0000135483 N 0.732
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.732
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.732
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.732
MDP0000315125 Malus domestica MDP0000315125 N 0.732
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.732
SIGC Arabidopsis thaliana AT3G53920 N 0.732
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.732
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.732
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.732
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.732
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.718
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.718
Bo4g120510 Brassica oleracea Bo4g120510 N 0.718
mgf012819m Mimulus guttatus mgf012819m N 0.704
Cla022529 Citrullus lanatus Cla022529 N 0.704
Bra014857 Brassica rapa Bra014857 N 0.704