CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_4725
(
Hordeum vulgare
)
Sigma 70
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04542 (Sigma70_r2)
IPR007627
MLOC_4725
T323873_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_4725.10
Sigma 70
277
347
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.1
Sigma 70
159
229
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.2
Sigma 70
159
229
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.3
Sigma 70
277
347
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.4
Sigma 70
315
385
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.5
Sigma 70
312
382
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.6
Sigma 70
312
382
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.7
Sigma 70
277
347
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.8
Sigma 70
277
347
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
MLOC_4725.9
Sigma 70
315
385
MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRL
Links
Other
Sigma 70
family TFs
Other
Hordeum vulgare
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_5DL_8DC4CC983
Triticum aestivum
Traes_5DL_8DC4CC983
N
1.000
Traes_5BL_B1F704307
Triticum aestivum
Traes_5BL_B1F704307
N
1.000
Traes_4AL_A0565AC4C
Triticum aestivum
Traes_4AL_A0565AC4C
N
1.000
TRIUR3_06257
Triticum urartu
TRIUR3_06257
N
1.000
BRADI1G00750
Brachypodium distachyon
BRADI1G00750
N
1.000
F775_07378
Aegilops tauschii
F775_07378
N
1.000
Pavir.Ib04452
Panicum virgatum
Pavir.Ib04452
N
0.944
Si034994m.g
Setaria italica
Si034994m.g
N
0.944
OPUNC08G07030
Oryza punctata
OPUNC08G07030
N
0.944
OB08G17050
Oryza brachyantha
OB08G17050
N
0.944
OBART08G07320
Oryza barthii
OBART08G07320
N
0.930
OGLUM08G08160
Oryza glumaepatula
OGLUM08G08160
N
0.930
Pavir.Ha01929
Panicum virgatum
Pavir.Ha01929
N
0.930
GRMZM2G144196
Zea mays
GRMZM2G144196
N
0.930
OMERI03G18460
Oryza meridionalis
OMERI03G18460
N
0.930
OLONG_007958
Oryza longistaminata
OLONG_007958
N
0.930
BGIOSGA028267
Oryza indica
BGIOSGA028267
N
0.930
ONIVA08G08070
Oryza nivara
ONIVA08G08070
N
0.930
Sb01g000390
Sorghum bicolor
Sb01g000390
N
0.930
ORGLA08G0064000
Oryza glaberrima
ORGLA08G0064000
N
0.930
OS08G0242800
Oryza sativa
OS08G0242800
N
0.930
ORUFI08G08440
Oryza rufipogon
ORUFI08G08440
N
0.930
LPERR08G06520
Leersia perrieri
LPERR08G06520
N
0.915
Pavir.Ia00050
Panicum virgatum
Pavir.Ia00050
N
0.915