ORGLA05G0239100 (Oryza glaberrima)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 ORGLA05G0239100 T323922_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA05G0239100.1 Sigma 70 267 338

Links

Other Sigma 70 family TFs
Other Oryza glaberrima TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA020460 Oryza indica BGIOSGA020460 N 1.000
Bo9g013770 Brassica oleracea Bo9g013770 N 0.710
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.710
Bra026466 Brassica rapa Bra026466 N 0.710
BRADI2G14790 Brachypodium distachyon BRADI2G14790 N 0.710
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.710
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.710
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.725
Ca_03953 Cicer arietinum Ca_03953 N 0.725
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.710
Cla004302 Citrullus lanatus Cla004302 N 0.725
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.725
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.710
F775_08366 Aegilops tauschii F775_08366 N 0.855
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.710
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.710
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.725
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.739
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.725
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.710
GRMZM2G077436 Zea mays GRMZM2G077436 N 0.841
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.739
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.957
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.725
MDP0000831937 Malus domestica MDP0000831937 N 0.710
mgf001401m Mimulus guttatus mgf001401m N 0.754
mgf006107m Mimulus guttatus mgf006107m N 0.710
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.855
OB05G35020 Oryza brachyantha OB05G35020 N 0.971
OBART05G27520 Oryza barthii OBART05G27520 N 1.000
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 1.000
OLONG_028119 Oryza longistaminata OLONG_028119 N 1.000
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 1.000
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 1.000
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 1.000
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.710
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 1.000
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.928
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.710
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.710
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.899
Si021904m.g Setaria italica Si021904m.g N 0.928
SIGE Arabidopsis thaliana AT5G24120 N 0.710
SIGE Vitis vinifera VIT_16s0050g02520 N 0.725
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.710
TCM_015349 Theobroma cacao TCM_015349 N 0.725
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.710
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.855
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.855