PGSC0003DMG400031111 (Solanum tuberosum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 PGSC0003DMG400031111 T323944_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400079883 Sigma 70 379 449

Links

Other Sigma 70 family TFs
Other Solanum tuberosum TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.915
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.915
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.972
SIGB Arabidopsis thaliana AT1G08540 N 0.972
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.972
Bo5g009070 Brassica oleracea Bo5g009070 N 0.944
Bra030732 Brassica rapa Bra030732 N 0.972
Bra018617 Brassica rapa Bra018617 N 0.944
PK16345.1 Cannabis sativa PK16345.1 N 0.944
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.972
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.972
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.944
Ca_04693 Cicer arietinum Ca_04693 N 0.873
Cla007091 Citrullus lanatus Cla007091 N 0.944
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.930
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.930
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.930
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.930
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.972
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.944
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.930
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.930
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.859
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.704
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.803
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.803
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.944
MDP0000157652 Malus domestica MDP0000157652 N 0.930
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.930
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.887
mgf015824m Mimulus guttatus mgf015824m N 0.958
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.873
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.845
OB11G19800 Oryza brachyantha OB11G19800 N 0.704
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.704
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.704
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.704
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.704
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.718
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.704
OS11G0448400 Oryza sativa OS11G0448400 N 0.704
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.714
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.704
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.704
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.704
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.775
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.944
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.901
Pm025497 Prunus mume Pm025497 N 0.930
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.930
30148.m001412 Ricinus communis 30148.m001412 N 0.944
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.915
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.930
Si026193m.g Setaria italica Si026193m.g N 0.704
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.986
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.704
TCM_025741 Theobroma cacao TCM_025741 N 0.944
SIGB Vitis vinifera VIT_15s0024g00640 N 0.930