POPTR_0006s12760 (Populus trichocarpa)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 POPTR_0006s12760 T323954_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s12760.1 Sigma 70 299 369

Links

Other Sigma 70 family TFs
Other Populus trichocarpa TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.732
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.706
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.735
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.817
SIGF Arabidopsis thaliana AT2G36990 N 0.817
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.817
Bo4g186560 Brassica oleracea Bo4g186560 N 0.817
Bra017213 Brassica rapa Bra017213 N 0.803
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.817
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.817
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.817
Ca_17153 Cicer arietinum Ca_17153 N 0.718
Ca_12052 Cicer arietinum Ca_12052 N 0.775
Cla018594 Citrullus lanatus Cla018594 N 0.859
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.831
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.817
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.831
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.831
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.817
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.873
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.789
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.746
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.746
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.789
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.732
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.761
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.859
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.789
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.817
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.718
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.789
mgf007606m Mimulus guttatus mgf007606m N 0.761
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.784
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.704
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.704
Pm030137 Prunus mume Pm030137 N 0.873
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.873
30078.m002307 Ricinus communis 30078.m002307 N 0.887
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.930
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.859
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.859
TCM_022198 Theobroma cacao TCM_022198 N 0.831
SIGF Vitis vinifera VIT_08s0040g01560 N 0.817