SIG4 (Populus trichocarpa)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 POPTR_0009s06210 T323955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s06210.1 Sigma 70 189 259
POPTR_0009s06210.2 Sigma 70 189 259
POPTR_0009s06210.3 Sigma 70 189 259
POPTR_0009s06210.4 Sigma 70 189 259
POPTR_0009s06210.5 Sigma 70 189 259

Links

Other Sigma 70 family TFs
Other Populus trichocarpa TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.915
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.915
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.817
Bo9g166510 Brassica oleracea Bo9g166510 N 0.817
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.817
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.817
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.817
SIGD Arabidopsis thaliana AT5G13730 N 0.817
Bra023430 Brassica rapa Bra023430 N 0.817
Bo2g011520 Brassica oleracea Bo2g011520 N 0.817
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.817
Bra008807 Brassica rapa Bra008807 N 0.817
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.803
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.800
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.789
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.789
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.775
29864.m001444 Ricinus communis 29864.m001444 N 0.775
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.761
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.761
Pm016510 Prunus mume Pm016510 N 0.746
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.746
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.746
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.719
MDP0000235160 Malus domestica MDP0000235160 N 0.718
PK06863.1 Cannabis sativa PK06863.1 N 0.718
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.704