POPTR_0015s02320 (Populus trichocarpa)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 POPTR_0015s02320 T323959_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s02320.1 Sigma 70 1 35
POPTR_0015s02320.2 Sigma 70 1 36
POPTR_0015s02320.3 Sigma 70 1 36

Links

Other Sigma 70 family TFs
Other Populus trichocarpa TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.944
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.943
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.943
Pm019782 Prunus mume Pm019782 N 0.943
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.943
MDP0000831937 Malus domestica MDP0000831937 N 0.914
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.914
Bra026466 Brassica rapa Bra026466 N 0.889
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.889
SIGE Arabidopsis thaliana AT5G24120 N 0.889
Bo9g013770 Brassica oleracea Bo9g013770 N 0.889
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.889
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.889
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.889
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.889
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.886
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.861
mgf006107m Mimulus guttatus mgf006107m N 0.829
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.800
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.800
GRMZM2G077436 Zea mays GRMZM2G077436 N 0.800
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.778
Si021904m.g Setaria italica Si021904m.g N 0.771
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.771
OB05G35020 Oryza brachyantha OB05G35020 N 0.771
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.771