SIGF (Vitis vinifera)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 VIT_08s0040g01560 T324039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_08s0040g01560.t01 Sigma 70 325 395

Links

Other Sigma 70 family TFs
Other Vitis vinifera TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30078.m002307 Ricinus communis 30078.m002307 N 0.887
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.746
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.706
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.704
Bo4g186560 Brassica oleracea Bo4g186560 N 0.831
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.831
Bra017213 Brassica rapa Bra017213 N 0.817
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.831
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.831
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.831
Ca_12052 Cicer arietinum Ca_12052 N 0.789
Ca_17153 Cicer arietinum Ca_17153 N 0.746
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.817
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.845
Cla018594 Citrullus lanatus Cla018594 N 0.859
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.831
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.859
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.845
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.887
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.789
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.803
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.803
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.789
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.817
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.775
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.845
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.732
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.757
mgf007606m Mimulus guttatus mgf007606m N 0.831
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.732
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.803
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.845
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.718
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.915
Pm030137 Prunus mume Pm030137 N 0.915
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.817
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.915
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.831
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.831
SIGF Arabidopsis thaliana AT2G36990 N 0.831
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.915
TCM_022198 Theobroma cacao TCM_022198 N 0.845
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.831